d07b35a4251fd13b1857b2cc513fd42446bf30cc max Thu Jan 16 04:09:56 2014 -0800 fixed some more typos in pubs as/sql files diff --git src/hg/lib/pubsBingBlatPsl.as src/hg/lib/pubsBingBlatPsl.as index dddfa52..119f3dd 100644 --- src/hg/lib/pubsBingBlatPsl.as +++ src/hg/lib/pubsBingBlatPsl.as @@ -1,26 +1,26 @@ -table pubsBlatPsl +table pubsBingBlatPsl "publications track sequence matches as PSL plus two additional fields" ( int matches; "Number of bases that match that aren't repeats" int misMatches; "Number of bases that don't match" int repMatches; "Number of bases that match but are part of repeats" int nCount; "Number of 'N' bases" int qNumInsert; "Number of inserts in query" int qBaseInsert; "Number of bases inserted in query" int tNumInsert; "Number of inserts in target" int tBaseInsert; "Number of bases inserted in target" char[2] strand; "+ or - for query strand. second +/- for genomic strand" string qName; "sequence ID: 10 digits articleId, 3 digits file Id, 4 digits serial number" int qSize; "Query sequence size" int qStart; "Alignment start position in query" int qEnd; "Alignment end position in query" string tName; "Target sequence name" int tSize; "Target sequence size" int tStart; "Alignment start position in target" int tEnd; "Alignment end position in target" int blockCount; "Number of blocks in alignment" lstring blockSizes; "Size of each block" lstring qStarts; "Start of each block in query." lstring tStarts; "Start of each block in target." bigint articleId; "articleId of article in hgFixed.pubsBingArticle" )