7b63853e7d35a5af80fea81bc221910e2f55c1f5
max
  Thu Jan 16 03:52:10 2014 -0800
adding .as files for publications track, ref #12212
diff --git src/hg/lib/pubsBlatPsl.as src/hg/lib/pubsBlatPsl.as
new file mode 100644
index 0000000..dddfa52
--- /dev/null
+++ src/hg/lib/pubsBlatPsl.as
@@ -0,0 +1,26 @@
+table pubsBlatPsl
+"publications track sequence matches as PSL plus two additional fields"
+    (
+    int matches;          "Number of bases that match that aren't repeats"
+    int misMatches;       "Number of bases that don't match"
+    int repMatches;       "Number of bases that match but are part of repeats"
+    int nCount;           "Number of 'N' bases"
+    int qNumInsert;       "Number of inserts in query"
+    int qBaseInsert;      "Number of bases inserted in query"
+    int tNumInsert;       "Number of inserts in target"
+    int tBaseInsert;      "Number of bases inserted in target"
+    char[2] strand;       "+ or - for query strand. second +/- for genomic strand"
+    string qName;         "sequence ID: 10 digits articleId, 3 digits file Id, 4 digits serial number"
+    int qSize;            "Query sequence size"
+    int qStart;           "Alignment start position in query"
+    int qEnd;             "Alignment end position in query"
+    string tName;         "Target sequence name"
+    int tSize;            "Target sequence size"
+    int tStart;           "Alignment start position in target"
+    int tEnd;             "Alignment end position in target"
+    int blockCount;       "Number of blocks in alignment"
+    lstring blockSizes;   "Size of each block"
+    lstring qStarts;      "Start of each block in query."
+    lstring tStarts;      "Start of each block in target."
+    bigint articleId;     "articleId of article in hgFixed.pubsBingArticle"
+    )