741f82fa54f9befc60d2cd84e84ddd67683755da
hiram
  Fri Jan 24 15:34:00 2014 -0800
move common lav reading business into the library and fixup more lavToPsl bugs and add to lav testing refs #12502
diff --git src/hg/lib/makefile src/hg/lib/makefile
index 128b07e..a0669a5 100644
--- src/hg/lib/makefile
+++ src/hg/lib/makefile
@@ -54,31 +54,31 @@
     genomeRangeTreeFile.o genomicDups.o \
     genomicSuperDups.o geoMirror.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o \
     ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o gpFx.o \
     growthCondition.o grp.o gwasCatalog.o haplotypes.o \
     hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o \
     hapmapSnps.o hapmapSnpsCombined.o \
     hCommon.o \
     hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o \
     hgFindSpec.o hgFindSpecCustom.o \
     hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o \
     HInv.o hubConnect.o hui.o humanParalog.o \
     imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o itemDetailsHtml.o jalview.o \
     jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o \
     jgiGene.o \
     kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o \
-    ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o \
+    lav.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o \
     llaInfo.o lrg.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o \
     makeItemsItem.o mammalPsg.o mapSts.o \
     mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o \
     minChromSize.o minGeneInfo.o mrnaMisMatch.o \
     mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o \
     netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o \
     pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o \
     polyGenotype.o protFeat.o pscreen.o \
     pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o \
     rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o \
     refLink.o refSeqStatus.o \
     rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o \
     rmskAlign.o rmskJoined.o rmskOut2.o \
     rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o \
     rnaSecStr.o tfbsConsFactors.o \