8907b18e3892381abca17e4b1f550f1ee06bafca
max
  Wed Jan 22 07:54:34 2014 -0800
adding missing field to .as, refs #12212
diff --git src/hg/lib/pubsBlatPsl.as src/hg/lib/pubsBlatPsl.as
index dddfa52..9ba475d 100644
--- src/hg/lib/pubsBlatPsl.as
+++ src/hg/lib/pubsBlatPsl.as
@@ -1,26 +1,27 @@
 table pubsBlatPsl
 "publications track sequence matches as PSL plus two additional fields"
     (
     int matches;          "Number of bases that match that aren't repeats"
     int misMatches;       "Number of bases that don't match"
     int repMatches;       "Number of bases that match but are part of repeats"
     int nCount;           "Number of 'N' bases"
     int qNumInsert;       "Number of inserts in query"
     int qBaseInsert;      "Number of bases inserted in query"
     int tNumInsert;       "Number of inserts in target"
     int tBaseInsert;      "Number of bases inserted in target"
     char[2] strand;       "+ or - for query strand. second +/- for genomic strand"
     string qName;         "sequence ID: 10 digits articleId, 3 digits file Id, 4 digits serial number"
     int qSize;            "Query sequence size"
     int qStart;           "Alignment start position in query"
     int qEnd;             "Alignment end position in query"
     string tName;         "Target sequence name"
     int tSize;            "Target sequence size"
     int tStart;           "Alignment start position in target"
     int tEnd;             "Alignment end position in target"
     int blockCount;       "Number of blocks in alignment"
     lstring blockSizes;   "Size of each block"
     lstring qStarts;      "Start of each block in query."
     lstring tStarts;      "Start of each block in target."
+    string tSeqType;      "types of matching sequence db: g=genome, c=cdna, p=protein (comma-sep)"
     bigint articleId;     "articleId of article in hgFixed.pubsBingArticle"
     )