aabbf0b1f000ede3a0c206d1bd741834db14a8f6 mspeir Thu Jan 23 09:01:49 2014 -0800 Changing title for Web Sequences track announcement, refs #12212 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index da31b46..2a674d0 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,119 +1,119 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <p> <font face="courier" size="3"><b>22 January 2014 - - Web Sequences Track now available for hg19 and other assemblies</b></font> + All the DNA on the internet now at your fingertips!</b></font> </p> <p> We're pleased to announce the release of the Web Sequences track on the UCSC Genome Browser. This track, produced in collaboration with Microsoft Research, contains the results of a 30-day scan for DNA sequences from over 40 billion different webpages. The sequences were then mapped with Blat to the human genome (hg19) and numerous other species including mouse (mm9), rat (rn4), and zebrafish (danRer7). The data were extracted from a variety of sources including patents, online textbooks, help forums, and any other webpages that contain DNA sequence. In essence, this track displays the Blat alignments of nearly every DNA sequence on the internet! The <A HREF="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=pubsBingBlat">Web Sequences</A> track description page contains more details on how the track was generated. </p> <p> We would like to acknowledge Max Haeussler and Matt Speir from the UCSC Genome Browser staff and Bob Davidson from Microsoft Research for their hard work in creating this track. </p> <p> <font face="courier" size="3"><b>14 January 2014 - Two E. coli comparative assembly hubs now available</b></font> </p> <p> We're pleased to add two new assembly hubs produced by the UCSC <A HREF="https://cbse.soe.ucsc.edu/hausslerlab" TARGET="_BLANK">David Haussler lab</A> to our collection of publicly available hubs. The new hubs feature over 60 bacterial assemblies, including more than 55 different E. coli strains. The assembly annotations include genes, pathogenic genes, conservation, GC percent, repetitive elements and much more. </p> <p> These hubs focus on comparative genomics and showcase the new "snake" track type. Snakes, which visualize alignments from <A HREF="http://genome.ucsc.edu/FAQ/FAQformat.html#format20">Hierarchical Alignment</A> (HAL) files, provide a way to view sets of pairwise gapless alignments that may overlap on both the chosen genome (reference) and the query genome, and show various types of genomic variations such as insertions, substitutions, and duplications. More details about the new snake track display and its configuration options can be found on our Genome Browser <a href="http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html" target="_blank">help</a> page. </p> <p> To access and view these hubs, navigate to the <A HREF="http://genome.ucsc.edu/cgi-bin/hgHubConnect">Track Hub gateway page</A> and select one of the two E. coli comparative assembly hubs from the Public Hubs list. </p> <p> We would like to acknowledge Ngan Nguyen, Glenn Hickey, Brian Raney, Joel Armstrong, Benedict Paten, Matt Speir, and Luvina Guruvadoo for their hard work in creating these hubs. </p> <hr> <!-- staged for archive use <p> <font face="courier" size="3"><b>22 January 2014 - Web Sequences Track now available for hg19 and other assemblies</b></font> </p> <p> We're pleased to announce the release of the Web Sequences track on the UCSC Genome Browser. This track, produced in collaboration with Microsoft Research, contains the results of a 30-day scan for DNA sequences from over 40 billion different webpages. - <a href="goldenPath/newsarch.html#012214">Read more</a> + <a href="goldenPath/newsarch.html#012214">Read more.</a> </p> <p> <font face="courier" size="3"><b>14 January 2014 - Two E. coli comparative assembly hubs now available</b></font> We're pleased to add two new assembly hubs produced by the UCSC <A HREF="https://cbse.soe.ucsc.edu/hausslerlab" TARGET="_BLANK">David Haussler lab</A> to our collection of publicly available hubs. - <a href="goldenPath/newsarch.html#011414">Read more</a> + <a href="goldenPath/newsarch.html#011414">Read more.</a> </p> --> <!-- start archives --> <p> <font face="courier" size="3"><b>27 November 2013 - 100 Species Conservation Track now available on hg19</b></font> </p> <p> We're happy to announce the release of a new track on the hg19/GRCh37 human Genome Browser. The new Conservation track shows multiple alignments of 100 species and measurements of evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. - <a href="goldenPath/newsarch.html#112713">Read more</a> + <a href="goldenPath/newsarch.html#112713">Read more.</a> </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>