Commits for hiram

v295_base to v296_preview (2014-02-03 to 2014-02-10) v296

• incorrect if() statement construction refs #11681
  • src/hg/hgSelect/hgSelect.c - lines changed 1, context: html, text, full: html, text
• can catch empty if() statement here with Wempty-body refs #12209
  • src/inc/common.mk - lines changed 1, context: html, text, full: html, text
• fix broken if() statement refs #12209
  • src/lib/bbiRead.c - lines changed 1, context: html, text, full: html, text
• fix broken if() statement refs #12209
  • src/hg/lib/customFactory.c - lines changed 1, context: html, text, full: html, text
• fix empty if() statement warning refs #12209
  • src/hg/lib/cart.c - lines changed 2, context: html, text, full: html, text
• fix empty if() statement warning refs #12209
  • src/hg/hgc/lowelab.c - lines changed 1, context: html, text, full: html, text
• use rsync instead of cp --update to avoid errors for cp that doesn't have that option refs #12209
  • src/hg/js/makefile - lines changed 1, context: html, text, full: html, text
• do not need the pthread business on the Mac it causes constant warnings refs #12209
  • src/inc/common.mk - lines changed 2, context: html, text, full: html, text
• beginning to reload fixed multiz100way tables refs #12260
  • src/hg/makeDb/doc/hg19.txt - lines changed 29, context: html, text, full: html, text
• reloaded annotated maf tables and frames for multiz100way redo refs #12260
  • src/hg/makeDb/doc/hg19.txt - lines changed 46, context: html, text, full: html, text
• done with mm10 lastz/chain/net refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 67, context: html, text, full: html, text
• done with canFam3 lastz/chain/net refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 53, context: html, text, full: html, text
• adding hg38 chain net refs #11681
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 50, context: html, text, full: html, text
• adding hg38 and reigning in rogue legacy species refs #11681
  • src/hg/makeDb/trackDb/mouse/mm10/hg19ChainNet.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/hg38ChainNet.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.euarchontoglireChainNet.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.previousVersionsChainNet.ra - lines changed 62, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 1, context: html, text, full: html, text
• v296 preview1 refs #12535
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text