Commits for max

v297_preview2 to v297_base (2014-03-10 to 2014-03-17) v297

• adding clade/org/db options like on hgGateway to hgMirror, refs #11957
  • src/hg/hgMirror/hgMirror - lines changed 248, context: html, text, full: html, text
• Moving code from commit 0fb6cafc5cebeb0f383804ed9df2cd01be10227f into hdbbecause it's also needed by hgPcr. refs #11957. (Should not affect RR, as
  hReplaceGbdb will return the same string, so it only adds and then
  removes a .2bit filename from the path.)
  
  • src/hg/hgBlat/hgBlat.c - lines changed 12, context: html, text, full: html, text
  • src/hg/hgPcr/hgPcr.c - lines changed 1, context: html, text, full: html, text
  • src/hg/inc/hdb.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hdb.c - lines changed 21, context: html, text, full: html, text
• changing makeTableList command for better compatibility with Jorge'scronjobs, refs #11957
  
  • src/hg/utils/makeTableList/makeTableList.c - lines changed 89, context: html, text, full: html, text
• change of comment after refs #12849
  • src/hg/lib/hdb.c - lines changed 2, context: html, text, full: html, text
• after code review: changed comments and variable names in jksql.Only aesthestics, no logic change in this commit.
  Should make the code more readable. refs #12849
  
  • src/hg/lib/jksql.c - lines changed 63, context: html, text, full: html, text
• suppress email message from test at job, refs #11957
  • src/hg/hgMirror/hgMirror - lines changed 1, context: html, text, full: html, text