Commits for hiram

v296_base to v297_preview (2014-02-24 to 2014-03-03) v297

• load ncbiAltSequence PSL mappings with sequence display refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 40, context: html, text, full: html, text
• new arrangement of the Alt Map track refs #11681
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 57, context: html, text, full: html, text
• new organization for the Alt Map track refs #11681
  • src/hg/makeDb/trackDb/human/hg38/altSequence.html - lines changed 86, context: html, text, full: html, text
• cosmic download site has changed the format of their file names refs #10158
  • src/hg/utils/automation/loadCosmic.pl - lines changed 4, context: html, text, full: html, text
• update cosmic to v68 refs #10158
  • src/hg/makeDb/doc/hg19.txt - lines changed 28, context: html, text, full: html, text
• updating documents to Alt Map sequence refs #11681
  • src/hg/makeDb/trackDb/human/hg38/altSequence.html - lines changed 95, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/description.html - lines changed 1, context: html, text, full: html, text
• correct tablename for Alt Map table name refs #11681
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• default priority for UCSC Genes and hide centromeres refs #11681
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• patch to fix build on OSX which has no malloc.h refs #12656
  • src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/customFactory.c - lines changed 2, context: html, text, full: html, text
• felCat5 chain net now on hg19 refs #12744
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
• starting rat lastz refs #11681
  • src/hg/makeDb/doc/hg38.txt - lines changed 110, context: html, text, full: html, text
• v75 release definitions refs #12796
  • src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 210, context: html, text, full: html, text
• preview1 v297 refs #12656
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text