c0d92fd15943e4adf0997f27e464bacdb9b811f1 pauline Fri Feb 28 14:07:43 2014 -0800 Adding section about new training intake survey refs #12753. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 1f67fa0..d2a88e5 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -14,105 +14,105 @@ </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <p> + <font face="courier" size="3"><b>28 February 2014 - + New! Expanded onsite workshop program!</b> </font> + </p> + <p> + Explore the full power of the UCSC Genome Browser! Thanks to the funding support + of NHGRI, we can now offer hands-on Genome Browser training onsite at your + institution, tailored to your audience's level of expertise. Through this + program, the services of our expert trainer are provided for free, and + participating institutions cover only the transportation from UCSC, lodging, + and a flat fee to cover other costs. + </p> + <p> + For more information or to submit a request for a workshop, please visit + <a href="http://bit.ly/ucscTraining" target="_blank">our survey</a>. + </p> + + <p> <font face="courier" size="3"><b>22 January 2014 - All the DNA on the internet now at your fingertips!</b></font> </p> <p> We're pleased to announce the release of the Web Sequences track on the UCSC Genome Browser. This track, produced in collaboration with Microsoft Research, contains the results of a 30-day scan for DNA sequences from over 40 billion different webpages. The sequences were then mapped with Blat to the human genome (hg19) and numerous other species including mouse (mm9), rat (rn4), and zebrafish (danRer7). The data were extracted from a variety of sources including patents, online textbooks, help forums, and any other webpages that contain DNA sequence. In essence, this track displays the Blat alignments of nearly every DNA sequence on the internet! The <A HREF="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=pubsBingBlat">Web Sequences</A> track description page contains more details on how the track was generated. </p> <p> We would like to acknowledge Max Haeussler and Matt Speir from the UCSC Genome Browser staff and Bob Davidson from Microsoft Research for their hard work in creating this track. </p> + <hr> + + <!-- staged for archive use <p> - <font face="courier" size="3"><b>14 January 2014 - - Two E. coli comparative assembly hubs now available</b></font> - </p> - <p> - We're pleased to add two new assembly hubs produced by the UCSC - <A HREF="https://cbse.soe.ucsc.edu/hausslerlab" TARGET="_BLANK">David Haussler lab</A> - to our collection of publicly available hubs. The new hubs feature over 60 bacterial assemblies, - including more than 55 different E. coli strains. The assembly annotations include genes, pathogenic - genes, conservation, GC percent, repetitive elements and much more. - </p> - <p> - These hubs focus on comparative genomics and showcase the new "snake" track type. Snakes, which - visualize alignments from - <A HREF="http://genome.ucsc.edu/FAQ/FAQformat.html#format20">Hierarchical Alignment</A> - (HAL) files, provide a way to view sets of pairwise gapless alignments that may overlap on both - the chosen genome (reference) and the query genome, and show various types of genomic variations - such as insertions, substitutions, and duplications. More details about the new snake track display - and its configuration options can be found on our Genome Browser - <a href="http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html" target="_blank">help</a> page. - </p> - <p> - To access and view these hubs, navigate to the - <A HREF="http://genome.ucsc.edu/cgi-bin/hgHubConnect">Track Hub gateway page</A> - and select one of the two E. coli comparative assembly hubs from the Public Hubs list. + <font face="courier" size="3"><b>28 February 2014 - + New! Expanded onsite workshop program!</b> </font> </p> <p> - We would like to acknowledge Ngan Nguyen, Glenn Hickey, Brian Raney, Joel Armstrong, Benedict Paten, - Matt Speir, and Luvina Guruvadoo for their hard work in creating these hubs. + Explore the full power of the UCSC Genome Browser! + Thanks to the funding support of NHGRI, we can now offer hands-on Genome Browser + training onsite at your institution. For more information or to submit a request + for a workshop, please visit <a href="http://bit.ly/ucscTraining" target="_blank">our survey</a>. </p> - <hr> - <!-- staged for archive use <p> <font face="courier" size="3"><b>22 January 2014 - Web Sequences Track now available for hg19 and other assemblies</b></font> </p> <p> We're pleased to announce the release of the Web Sequences track on the UCSC Genome Browser. This track, produced in collaboration with Microsoft Research, contains the results of a 30-day scan for DNA sequences from over 40 billion different webpages. <a href="goldenPath/newsarch.html#012214">Read more</a>. </p> + --> + + <!-- start archives --> <p> <font face="courier" size="3"><b>14 January 2014 - Two E. coli comparative assembly hubs now available</b></font> + </p> + <p> We're pleased to add two new assembly hubs produced by the UCSC <A HREF="https://cbse.soe.ucsc.edu/hausslerlab" TARGET="_BLANK">David Haussler lab</A> to our collection of publicly available hubs. <a href="goldenPath/newsarch.html#011414">Read more</a>. </p> - --> - - <!-- start archives --> <p> <font face="courier" size="3"><b>27 November 2013 - 100 Species Conservation Track now available on hg19</b></font> </p> <p> We're happy to announce the release of a new track on the hg19/GRCh37 human Genome Browser. The new Conservation track shows multiple alignments of 100 species and measurements of evolutionary conservation using two methods (phastCons and phyloP) from the PHAST package. <a href="goldenPath/newsarch.html#112713">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE>