Commits for steve

v296_base to v297_preview (2014-02-24 to 2014-03-03) v297

• For hg38, made changes to description pages (and other relevant pages when necessary) (redmine #11681)
  • src/hg/makeDb/trackDb/chainSelf.html - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainSelf.html - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/chainSelf.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/description.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/gap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/scaffolds.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orfeomeMrna.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refGene.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refGene.new.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ucscToINSDC.html - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenoEst.html - lines changed 26, context: html, text, full: html, text
• Commented out html tags based on hgTablesTest robot errors; running hgTablesTest robot again to see if errors go away (redmine #12656)
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 4, context: html, text, full: html, text
• Accidentally commented out the description section header (redmine #12656)
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 3, context: html, text, full: html, text
• Made some html formatting corrections based on more errors in the hgTablesTest log (redmine #12656)
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeBuOrchid.html - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBuOrchid.html - lines changed 23, context: html, text, full: html, text
• Updated a URL for hg38 GENCODE; updated for other similar tracks as well (redmine #11681)
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV11.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV13.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV15.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV16.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV18.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV19.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV19.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeSuper.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/wgEncodeGencodeVM2.html - lines changed 1, context: html, text, full: html, text
• Fixed spacing error (redmine #11681)
  • src/hg/htdocs/goldenPath/help/oligoMatch.html - lines changed 2, context: html, text, full: html, text
• Made minor corrections; modified references (redmine #11681)
  • src/hg/makeDb/trackDb/refGene.html - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refGene.new.html - lines changed 9, context: html, text, full: html, text
• Added hg38 to GENCODE V19 sections (redmine #11681)
  • src/hg/makeDb/schema/all.joiner - lines changed 28, context: html, text, full: html, text
• While adding hg38 entries, noticed other problems; fixed chain/net entries in .ra files (redmine #11681)
  • src/hg/makeDb/trackDb/dog/canFam3/trackDb.chainNet.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam3/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac3/trackDb.chainNet.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac3/trackDb.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra - lines changed 8, context: html, text, full: html, text