Commits for markd
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v297_preview to v297_preview2 (2014-03-03 to 2014-03-10) v297
- fixed check for include escape in GFF3 files
- RM 12824 fix display of names in GENCODE 2-way pseudogenes
- src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text
- Fixed bug in GTF to genePred conversion where an assertion was triggered when theGTF had a spliced stop codon where the exon containing the first part of the
stop codon only consisted of the stop codon bases. For example, a two-base exon where
with two bases are the first two bases of the stop codon.
- src/hg/utils/gtfToGenePred/tests/expected/ensemblSplicedStop.gp - lines changed 1, context: html, text, full: html, text
- src/hg/utils/gtfToGenePred/tests/input/ensemblSplicedStop.gp - lines changed 71, context: html, text, full: html, text
- src/hg/utils/gtfToGenePred/tests/makefile - lines changed 7, context: html, text, full: html, text
- commit 5a7542dced0497f6d08a503a95eba87619b23a8aAuthor: Mark Diekhans <markd@soe.ucsc.edu>
Date: Wed Mar 5 19:35:34 2014 -0800
Fixed bug in GTF to genePred conversion where an assertion was triggered when the
GTF had a spliced stop codon where the exon containing the first part of the
stop codon only consisted of the stop codon bases. For example, a two-base exon where
with two bases are the first two bases of the stop codon. This commit handle negative
strand case.
- src/hg/utils/gtfToGenePred/tests/expected/ensemblSplicedStop.gp - lines changed 1, context: html, text, full: html, text
- src/hg/utils/gtfToGenePred/tests/input/ensemblSplicedStop.gp - lines changed 31, context: html, text, full: html, text
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