File Changes for angie

v298_preview2 to v298_base (2014-03-31 to 2014-04-07) v298

• src/hg/hgTables/hgTables.c
  • lines changed 12, context: html, text, full: html, text
    When we have multiple position matches, restore lastPosition(or defaultPosition).
    fixes #13009
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 6, context: html, text, full: html, text
    When we have multiple position matches, restore lastPosition(or defaultPosition).
    fixes #13009
    
• src/hg/hgVai/hgVai.c
  • lines changed 9, context: html, text, full: html, text
    When we have multiple position matches, restore lastPosition(or defaultPosition).
    fixes #13009
    
• src/hg/inc/jksql.h
  • lines changed 3, context: html, text, full: html, text
    Fixing what I believe was a misspelled function header in ed552b421.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 130, context: html, text, full: html, text
    Rebuilt snp138* tables and files from scratch 3/28/14 - 3/31/14 afterfinding that the FTP files available when b138 was announced were
    outdated and were replaced a few weeks after the announcement.
    1.2M SNPs had been dropped because they were not in the fasta files.
    refs #12975 #11438
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    Fixing checkHgFindSpec -checkTermRegex warning that Jonathan found -when the termRegex doesn't match (all of) the terms in the table,
    we need to add a dontCheck regex to cover all of the non-matching terms.
    
• src/hg/utils/automation/collectNcbiFuncAnnotations.pl
  • lines changed 3, context: html, text, full: html, text
    Prevent warning about uninitialized variables triggered by $refRow-only items.