File Changes for hiram

v298_preview2 to v298_base (2014-03-31 to 2014-04-07) v298

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 4, context: html, text, full: html, text
    fixup ensGene name display from code review refs #12957
• src/hg/hgTracks/menu.c
  • lines changed 3, context: html, text, full: html, text
    no mapviewer for hg18 and hg19 now uses build=previous and add hg38 link to NCBI refs #12871
• src/hg/hgTracks/simpleTracks.c
  • lines changed 4, context: html, text, full: html, text
    fixup ensGene name display from code review refs #12957
• src/hg/htdocs/images/Callorhinchus_milii.jpg
  • lines changed 0, context: html, text, full: html, text
    Elephant shark photo from http://www.flagstaffotos.com.au/ Wikipedia refs #12976
• src/hg/htdocs/images/Cricetulus_griseus.jpg
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    Chinese hamster photo from WikiMedia commons refs #6506
• src/hg/inc/versionInfo.h
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    New version number v298
• src/hg/makeDb/doc/balAcu1.txt
  • lines changed 68, context: html, text, full: html, text
    done with masking refs #12977
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    in the pushQ refs #12977
• src/hg/makeDb/doc/calMil1.txt
  • lines changed 347, context: html, text, full: html, text
    initial sequence and running masking refs #12976
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    genbank done constructing download files refs #12976
  • lines changed 8, context: html, text, full: html, text
    in the pushQ refs #12976
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    fix gap procedure steps refs #12976
• src/hg/makeDb/doc/rn5.txt
  • lines changed 6, context: html, text, full: html, text
    start monDom5 swap refs #8212
  • lines changed 4, context: html, text, full: html, text
    syntenic net for hg38 for 14-way refs #8212
  • lines changed 1, context: html, text, full: html, text
    recip best for Panda for 13-way alignment refs #8212
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added balAcu1 to daily hgwdev build refs #12977
  • lines changed 1, context: html, text, full: html, text
    Added calMil1 to daily hgwdev build refs #12976
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 19, context: html, text, full: html, text
    adding balAcu1 Minke whale refs #12977
  • lines changed 19, context: html, text, full: html, text
    adding calMil1 Elephant shark refs #12976
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added balAcu1 to daily hgwdev build refs #12977
  • lines changed 1, context: html, text, full: html, text
    Added calMil1 to daily hgwdev build refs #12976
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    adding definition for balAcuNames refs 12977
  • lines changed 1, context: html, text, full: html, text
    adding definition for balAcuNames refs 12977
  • lines changed 2, context: html, text, full: html, text
    adding calMil1 Elephant shark refs #12976
• src/hg/makeDb/schema/all.joiner
  • lines changed 12, context: html, text, full: html, text
    adding balAcu1 and calMil1 Minke whale and Elephant shark refs #12976 #12977
• src/hg/makeDb/trackDb/balAcu/balAcu1/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    moving cpgIslandSuper composite track to the top for balAcu1 and calMil1 refs #12977 #12976
  • lines changed 7, context: html, text, full: html, text
    setting default track visibilities refs #12977
• src/hg/makeDb/trackDb/calMil/calMil1/description.html
  • lines changed 63, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #12976
• src/hg/makeDb/trackDb/calMil/calMil1/gap.html
  • lines changed 30, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #12976
• src/hg/makeDb/trackDb/calMil/calMil1/gold.html
  • lines changed 34, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #12976
• src/hg/makeDb/trackDb/calMil/calMil1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #12976
  • lines changed 2, context: html, text, full: html, text
    moving cpgIslandSuper composite track to the top for balAcu1 and calMil1 refs #12977 #12976
  • lines changed 8, context: html, text, full: html, text
    set default track visibilities refs #12976
• src/hg/makeDb/trackDb/cpgIslandSuper.html
  • lines changed 79, context: html, text, full: html, text
    moving cpgIslandSuper composite track to the top for balAcu1 and calMil1 refs #12977 #12976
  • lines changed 7, context: html, text, full: html, text
    change the discussion of masked and unmasked versions to eliminate the hg38 specific language refs #12976 #12977
• src/hg/makeDb/trackDb/criGri/criGri1/description.html
  • lines changed 63, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #6506
• src/hg/makeDb/trackDb/criGri/criGri1/gap.html
  • lines changed 30, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #6506
• src/hg/makeDb/trackDb/criGri/criGri1/gold.html
  • lines changed 34, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #6506
• src/hg/makeDb/trackDb/criGri/criGri1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl refs #6506
• src/hg/makeDb/trackDb/human/hg38/cpgIslandSuper.html
  • lines changed 79, context: html, text, full: html, text
    moving cpgIslandSuper composite track to the top for balAcu1 and calMil1 refs #12977 #12976
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding calMil1 to the build refs #12976
  • lines changed 1, context: html, text, full: html, text
    adding criGri1 to the build refs #6506
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra
  • lines changed 1, context: html, text, full: html, text
    temporarily set cons60way to hide while maf table is reloaded refs #12260
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 28, context: html, text, full: html, text
    moving cpgIslandSuper composite track to the top for balAcu1 and calMil1 refs #12977 #12976
• src/hg/utils/automation/makePushQSql.pl
  • lines changed 2, context: html, text, full: html, text
    connection to hgwbeta for commands requires extra business now refs #12977
  • lines changed 1, context: html, text, full: html, text
    mysql create table now requires ENGINE and not TYPE refs #12976
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v298 final build refs #12803