ed552b421c008dad0b93b880923362902bf1e3d1 max Wed Apr 2 08:46:02 2014 -0700 Fixing hgVai again for gbib, refs #11957 and refs #12717. One problemwas that show tables cannot fail over. Probably need to libify one day as a sqlShowTables() function. Another problem are the nib directories in hg18. Working towards replacing all nib directories with their twoBit versions via a hg.conf statement. diff --git src/hg/hgVai/hgVai.c src/hg/hgVai/hgVai.c index 9314dd7..b378f3d 100644 --- src/hg/hgVai/hgVai.c +++ src/hg/hgVai/hgVai.c @@ -520,30 +520,33 @@ puts("<BR>"); endCollapsibleSection(); } char *findLatestSnpTable(char *suffix) /* Return the name of the 'snp1__<suffix>' table with the highest build number, if any. */ { if (startsWith(hubTrackPrefix, database)) return NULL; if (suffix == NULL) suffix = ""; char query[64]; sqlSafef(query, sizeof(query), "show tables like 'snp1__%s'", suffix); struct sqlConnection *conn = hAllocConn(database); struct slName *snpNNNTables = sqlQuickList(conn, query); +if (slCount(snpNNNTables)==0 && sqlFailoverConn(conn)!=NULL) + snpNNNTables = sqlQuickList(sqlFailoverConn(conn), query); + hFreeConn(&conn); if (snpNNNTables == NULL) return NULL; // Skip to last in list -- highest number (show tables can't use rlike or 'order by'): struct slName *table = snpNNNTables; while (table->next != NULL && isdigit(table->next->name[4]) && isdigit(table->next->name[5])) table = table->next; char *tableName = NULL; if (table != NULL) tableName = cloneString(table->name); slNameFreeList(&snpNNNTables); return tableName; } boolean findSnpBed4(char *suffix, char **retFileName, struct trackDb **retTdb)