404563416231e2b5a57eeee4fe09b0d9d2b77e60 max Wed Apr 2 05:50:41 2014 -0700 changing hgLiftOver strategy in the browserbox: downloading liftoverfiles to local disk instead of streaming them through http, refs #11957 and refs #12717 diff --git src/hg/inc/hdb.h src/hg/inc/hdb.h index bc55619..29343e4 100644 --- src/hg/inc/hdb.h +++ src/hg/inc/hdb.h @@ -190,38 +190,47 @@ * on this database. */ boolean hgPcrOk(char *database); /* Return TRUE if ok to put up hgPcr on this database. */ boolean hTableExists(char *db, char *table); /* Return TRUE if a table exists in database. */ boolean hTableOrSplitExists(char *db, char *table); /* Return TRUE if table (or a chrN_table) exists in database. */ char *hTableForTrack(char *db, char *trackName); /* Return a table for a track in db. Returns one of the split * tables, or main table if not split */ +char *hReplaceGbdbLocal(char* fileName); + /* Returns a gbdb filename, potentially rewriting it according to hg.conf's gbdbLoc1 */ + /* Result has to be freed */ + char *hReplaceGbdb(char* fileName); /* clone and change a filename that can be located in /gbdb to somewhere else * according to hg.conf's "gbdbLoc1" and "gbdbLoc2". Result has to be freed. */ char *hReplaceGbdbSeqDir(char *path, char *db); /* similar to hReplaceGbdb, but accepts a nib or 2bit "directory" (basename) under * gbdb, like /gbdb/hg19 (for jkLib that means /gbdb/hg19/hg19.2bit). */ + +char* hReplaceGbdbMustDownload(char* path); +/* given a location in /gbdb, rewrite it to the new location using gbdbLoc1 and download it + * if needed from gbdbLoc2. */ + void hParseTableName(char *db, char *table, char trackName[HDB_MAX_TABLE_STRING], char chrom[HDB_MAX_CHROM_STRING]); /* Parse an actual table name like "chr17_random_blastzWhatever" into * the track name (blastzWhatever) and chrom (chr17_random). */ int hChromSize(char *db, char *chromName); /* Return size of chromosome. */ struct chromInfo *hGetChromInfo(char *db, char *chrom); /* Get chromInfo for named chromosome (case-insens.) from db. * Return NULL if no such chrom. */ struct dnaSeq *hFetchSeq(char *fileName, char *seqName, int start, int end); /* Fetch sequence from file. If it is a .2bit file then fetch the named sequence. If it is .nib then just ignore seqName. */