File Changes for max

v298_preview to v298_preview2 (2014-03-24 to 2014-03-31) v298

• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 6, context: html, text, full: html, text
    adding option to create links back to UCSC for encode .pdf files, refs #11957 and #12717
• src/hg/hgMirror/hgMirror
  • lines changed 3, context: html, text, full: html, text
    disactivating udr in hgMirror, refs #11957
  • lines changed 7, context: html, text, full: html, text
    fixing bug in hgMirror where cancel had no effect on current job, refs #11957
  • lines changed 3, context: html, text, full: html, text
    another fix for not working cancel command, refs #11957
  • lines changed 4, context: html, text, full: html, text
    removing --partial option from rsync, refs #11957
  • lines changed 5, context: html, text, full: html, text
    handling invalid jobId, refs #11957
• src/hg/hgTables/mainPage.c
  • lines changed 5, context: html, text, full: html, text
    adding config option to suppress sending output to galaxy or great, refs #12717
  • lines changed 1, context: html, text, full: html, text
    forgot include
• src/hg/hgTracks/bamTrack.c
  • lines changed 6, context: html, text, full: html, text
    added bam track support to gbib, refs #11957, refs #12717(fileName2 is a not a great var name... any better idea?)
    
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 1, context: html, text, full: html, text
    small change in gbib doc, refs #11957
  • lines changed 8, context: html, text, full: html, text
    updating gbib doc, refs #12834, note 18
  • lines changed 8, context: html, text, full: html, text
    adding one more error message, refs #12834
  • lines changed 87, context: html, text, full: html, text
    adding auto update switch and moving troubleshoot section, refs #11957
  • lines changed 6, context: html, text, full: html, text
    adding note about gbib filenames, refs #12717
• src/hg/lib/jksql.c
  • lines changed 2, context: html, text, full: html, text
    small change to jksql for better debug messages, refs #11957
• src/hg/utils/makeTableList/makeTableList.c
  • lines changed 6, context: html, text, full: html, text
    making sure that username/password actually works
  • lines changed 9, context: html, text, full: html, text
    there is no userDb/sessionDb table on hgdownload so need to provideoption to connect to hgCentral without cartTablesOk(). refs #11957
    
• src/product/ex.hg.conf
  • lines changed 3, context: html, text, full: html, text
    adding doc for config option from last commit, refs #12717