File Changes for max

v299_preview2 to v299_base (2014-04-21 to 2014-04-28) v299

• src/browserbox/README.txt
  • lines changed 4, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/root/changes.txt
  • lines changed 3, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/root/cleanVm.sh
  • lines changed 3, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/root/cronUpdate.sh
  • lines changed 1, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/root/mirrorTrack
  • lines changed 1, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/root/updateBrowser.sh
  • lines changed 25, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/usr/local/apache/htdocs/favicon.ico
  • lines changed 0, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/usr/local/apache/htdocs/images/homeIconSprite.png
  • lines changed 0, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/browserbox/usr/local/apache/htdocs/style/gbib.css
  • lines changed 3, context: html, text, full: html, text
    cosmetic changes to make gbib more distinct from main site and also toremove links that direct user back to main site (unless required, like
    suggestion box), refs #12717
    
• src/hg/hgMirror/hgMirror
  • lines changed 25, context: html, text, full: html, text
    adding include file support to hgMirror
  • lines changed 5, context: html, text, full: html, text
    improving some comments in hgMirror
  • lines changed 6, context: html, text, full: html, text
    making hgMirror depend on a flag defined in hg.conf
  • lines changed 17, context: html, text, full: html, text
    refactoring some code of hgMirror into a function
  • lines changed 1, context: html, text, full: html, text
    fixing stupid typo
  • lines changed 12, context: html, text, full: html, text
    closing open cursors, hoping this helps against some errors on the box
  • lines changed 20, context: html, text, full: html, text
    as hgMirror is handling all the post-rsync changes to tables, need toadd a few rows for box-specific tracks on hg19
    
  • lines changed 2, context: html, text, full: html, text
    fixing small mysqldb and makefile bug
• src/hg/hgMirror/makefile
  • lines changed 2, context: html, text, full: html, text
    adding empty "clean" target
  • lines changed 4, context: html, text, full: html, text
    fixing small mysqldb and makefile bug
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 6, context: html, text, full: html, text
    compile-time option to add a password to some bigBed files for gbib-onlytracks, refs #11957
    
• src/hg/htdocs/goldenPath/help/gbib.html
  • lines changed 1, context: html, text, full: html, text
    updating docs to reflect final location of files, refs #11957
  • lines changed 9, context: html, text, full: html, text
    adding section about increasing memory to doc, refs #11957
• src/hg/lib/cart.c
  • lines changed 2, context: html, text, full: html, text
    moving cgiApoptosis call to a better place which should work in mostCGIs.
    
• src/hg/lib/cgiApoptosis.c
  • lines changed 2, context: html, text, full: html, text
    adding browserbox name to cgiApoptosis again, it mysteriously disappeared
• src/hg/lib/hdb.c
  • lines changed 1, context: html, text, full: html, text
    make hg.conf option false by default after comment from Braney
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    adding hgMirror to top-level cgi target, to get it onto hgdownload.thanks to a new hg.conf option, it will not run on the RR.
    
• src/inc/common.mk
  • lines changed 11, context: html, text, full: html, text
    compile-time option to add a password to some bigBed files for gbib-onlytracks, refs #11957
    
• src/product/ex.hg.conf
  • lines changed 26, context: html, text, full: html, text
    documenting the gbib hg.conf options, in case that mirrors want to usethem. refs #11957