File Changes for hiram

v299_preview to v299_preview2 (2014-04-14 to 2014-04-21) v299

• src/hg/makeDb/doc/criGri1.txt
  • lines changed 2, context: html, text, full: html, text
    correction from code review refs #13067
  • lines changed 12, context: html, text, full: html, text
    setting blatServers refs #6506
• src/hg/makeDb/doc/eriEur2.txt
  • lines changed 16, context: html, text, full: html, text
    add genscan procedure refs #9149
• src/hg/makeDb/doc/quickAssembly.txt
  • lines changed 229, context: html, text, full: html, text
    rearrange order of db creation so that masking can go directly into the database refs #252
  • lines changed 28, context: html, text, full: html, text
    separate cpgIslands and cpgIslandsUnmasked build and add gc5Base refs #252
• src/hg/makeDb/doc/taeGut2.txt
  • lines changed 60, context: html, text, full: html, text
    finish up the build and in the pushQ refs #10190
  • lines changed 1, context: html, text, full: html, text
    readjuste default position refs #10190
• src/hg/makeDb/genbank/etc/align.dbs
  • lines changed 1, context: html, text, full: html, text
    Added ochPri3 to daily hgwdev build refs #9347
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 17, context: html, text, full: html, text
    adding ochPri3 pika refs #9347
• src/hg/makeDb/genbank/etc/hgwdev.dbs
  • lines changed 1, context: html, text, full: html, text
    Added ochPri3 to daily hgwdev build refs #9347
• src/hg/makeDb/schema/all.joiner
  • lines changed 9, context: html, text, full: html, text
    adding taeGut2 rules refs #10190
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.chainNet.ra
  • lines changed 27, context: html, text, full: html, text
    readjust default track visibilities and order the chain net tracks refs #10190
• src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.ra
  • lines changed 15, context: html, text, full: html, text
    readjust default track visibilities and order the chain net tracks refs #10190
• src/hg/utils/automation/doCpgIslands.pl
  • lines changed 11, context: html, text, full: html, text
    add option to name specific load table name refs #12977
• src/hg/utils/automation/makeGenomeDb.pl
  • lines changed 2, context: html, text, full: html, text
    add reference to rsync download instructions refs #11706