40226e62f01d93eb041d0525dec18b2f49815ecd
max
  Thu May 15 17:07:05 2014 -0700
removed my symlinks as they tend to confuse everyone, including myself
diff --git src/browserbox/README.txt src/browserbox/README.txt
index 1b4a2cc..aac30f8 100644
--- src/browserbox/README.txt
+++ src/browserbox/README.txt
@@ -1,12 +1,18 @@
 This directory contains the config files that are needed for the 
 Genome Browser in a box. It should be possible to convert
 a Ubuntu 13 installation into a Genome Browser in a box by copying all these
 files into the root directory as sudo.
 
+the following symlinks are not part of the git repo:
+usr/local/apache/htdocs/folders -> /media
+usr/local/apache/trash ->  /data/trash/
+usr/local/apache/userdata -> /data/userdata/
+var/lib/mysql -> /data/mysql
+
 Change ownerships of /data/gbdb, /data/trash and /data/userdata to www-data and /data/mysql to mysql
 
 This tree does not include the trash cleaner binaries as they are > 5MB.
 
 All other changes of the box are documented in root/changes.txt
 
 The red box clipart is from http://www.clker.com/clipart-14656.html