Commits for hiram

v299_base to v300_preview (2014-04-28 to 2014-05-05) v300

• finished an in pushQ 007237 refs #9348
  • src/hg/makeDb/doc/sorAra2.txt - lines changed 1788, context: html, text, full: html, text
• initial files from makeGenomeDb.pl refs #13166
  • src/hg/makeDb/trackDb/turtle/chrPic2/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turtle/chrPic2/gap.html - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turtle/chrPic2/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turtle/chrPic2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding chrPic2 to the build refs #13166
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• adding Poecilia reticulata guppy fish and 126way for genomes on hand at UCSC refs #10272
  • src/hg/utils/phyloTrees/126way.commonNames.nh - lines changed 126, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/126way.nh - lines changed 126, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/126way.scientificNames.nh - lines changed 126, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/130way.commonNames.nh - lines changed 130, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/130way.nh - lines changed 130, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/130way.scientificNames.nh - lines changed 130, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/makefile - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/scientificNames.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/vertebrates.txt - lines changed 4, context: html, text, full: html, text
• adding chrPic2 painted turtle refs #13166
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
• adding chrPic2 painted turtle refs #13166
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• running up genbank to complete assembly build refs #13166
  • src/hg/makeDb/doc/chrPic2.txt - lines changed 535, context: html, text, full: html, text
• adding poeRet1 guppy refs #13170
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
• adding definition for poeRetNames refs #13170
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• add gold table search rule refs #6506
  • src/hg/makeDb/trackDb/criGri/criGri1/trackDb.ra - lines changed 5, context: html, text, full: html, text
• add gold table search rule refs #6506
  • src/hg/makeDb/doc/criGri1.txt - lines changed 27, context: html, text, full: html, text
• add gold track search rule refs #9419
  • src/hg/makeDb/trackDb/hedgehog/eriEur2/trackDb.ra - lines changed 5, context: html, text, full: html, text
• add gold table search rule refs #9149
  • src/hg/makeDb/doc/eriEur2.txt - lines changed 26, context: html, text, full: html, text
• add gold table search rule refs #10190
  • src/hg/makeDb/doc/taeGut2.txt - lines changed 26, context: html, text, full: html, text
• add gold table table search rule refs #10190
  • src/hg/makeDb/trackDb/zebraFinch/taeGut2/trackDb.ra - lines changed 6, context: html, text, full: html, text
• fixup path comment
  • src/hg/makeDb/doc/criGri1.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/eriEur2.txt - lines changed 1, context: html, text, full: html, text
• Added chrPic2 refs #13166
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• add gold search rule refs #13166
  • src/hg/makeDb/doc/chrPic2.txt - lines changed 36, context: html, text, full: html, text
• add gold table search rule refs #13166
  • src/hg/makeDb/trackDb/turtle/chrPic2/trackDb.ra - lines changed 6, context: html, text, full: html, text
• added blat server refs #12976
  • src/hg/makeDb/doc/calMil1.txt - lines changed 12, context: html, text, full: html, text
• adding cpgIslandsUnmasked track refs #334
  • src/hg/makeDb/doc/danRer7.txt - lines changed 16, context: html, text, full: html, text
• added cpgIslandsUnmasked track refs #7669
  • src/hg/makeDb/doc/dasNov3.txt - lines changed 14, context: html, text, full: html, text
• Added poeRet1 refs #13170
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
• adding photo from Wikimedia Commons refs #13170
  • src/hg/htdocs/images/Poecilia_reticulata.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• initial files from makeGenomeDb.pl refs #13170
  • src/hg/makeDb/trackDb/poeRet/poeRet1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/poeRet/poeRet1/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/poeRet/poeRet1/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/poeRet/poeRet1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding poeRet1 to the build refs #13170
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• adding gold table search rule refs #13170
  • src/hg/makeDb/trackDb/poeRet/poeRet1/trackDb.ra - lines changed 5, context: html, text, full: html, text
• adding Chinese hamster chain net to hg19 placental refs #6506
  • src/hg/makeDb/trackDb/human/chainNetPlacental.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
• adding taeGut2 chain net to galGal4 and melGal1 refs #10190
  • src/hg/makeDb/trackDb/chicken/galGal4/trackDb.chainNet.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal1/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/turkey/melGal1/trackDb.ra - lines changed 2, context: html, text, full: html, text
• adding taeGut2 chain net to galGal4 and melGal1 refs #10190
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 50, context: html, text, full: html, text
• v300 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text