34712d854ec879a9561add4538b45e595cd6dd07
jcasper
  Tue Apr 29 10:17:38 2014 -0700
Checking in most recent version of hgwdev hg.conf
diff --git confs/hgwdev.hg.conf confs/hgwdev.hg.conf
index 0d5ae0b..d1e215f 100644
--- confs/hgwdev.hg.conf
+++ confs/hgwdev.hg.conf
@@ -34,52 +34,52 @@
 # db.port=3306
 # *!# NOTE: the port override will only work when host is *not* localhost
 #	when localhost is used, MySQL may connect via shared memory
 #	connections and not via TCP/IP socket ports
 
 # if you want a different default species selection on the Gateway
 # page, change this default Human to one of the genomes from the
 #	defaultDb table in hgcentral:
 #	hgsql -e "select genome from defaultDb;" hgcentral
 # If you need a different version of that specific genome, change
 #	the defaultDb table entry, for example, a different mouse genome
 #	version as default:
 #	hgsql -e 'update defaultDb set name="mm8" where genome="Mouse"
 #	then this defaultGenome would read: defaultGenome=Mouse
 # 
-defaultGenome=Human
+#defaultGenome=Human
 
 # trackDb table to use. A simple value of `trackDb' is normally sufficient.
 # In general, the value is a comma-separated list of trackDb format tables to
 # search.  This supports local tracks combined with a mirror of the trackDb
 # table from UCSC. The names should be in the form `trackDb_suffix'. This
 # implies a parallel hgFindSpec format search table exists in the form
 # hgFindSpec_suffix.  The specified trackDb tables are searched in the order
 # specified, with the first occurance of a track being used.  You may associate
 # trackDb/hgFindSpec tables with other instances of genome databases using a
 # specification of profile:trackDbTbl, where profile is the name of a
 # databases profile in hg.conf, and trackDbTbl is the name of the table in the
 # remote databases.
 # 
 db.trackDb=trackDb
 #db.trackDb=trackDb_local,trackDb
 #db.trackDb=trackDb,remoteDbs:trackDb
 
 # track group table definitions.  This is a comma-seperate list similar to
 # db.trackDb that defines the track group tables.  Database profiles 
 # may alow be included using the syntax profile:grpTbl.
-db.grp=grp
+#db.grp=grp
 #db.grp=grp_local,grp
 #db.grp=grp,remoteDbs:grp
 
 #  New browser function as of March 2007, allowing saved genome browser
 #	sessions into genomewiki
 
 #  New browser function as of May 2012, using stand alone hgLogin CGI
 #  login system to replace authentication service provided by
 #  genomewiki.
 #  To enable the hgLogin function, set the login.systemName and
 #  wiki.host
 #  as below. Note, do not set the values of the two cookies to other
 #  value.
 
 login.systemName=hgLogin CGI
@@ -133,35 +133,35 @@
 # fonts.extra=yes
 
 # Turn this back on after people look at genome-test
 # browser.style=../style/genome-test.css
 
 #       add config option to let users personalize background and style
 #       of the browser. Setting is saved in the cart and can be set from
 #       the configure page.
 #       format is browser.theme.<name>=<stylesheet>[,<background>]
 #       background file is optional
 # browser.theme.classic=,../images/floretTest.jpg
 # browser.theme.sansSerif=theme-modern.css,http://silverlight.net/content/samples/sl2/silverlightairlines/run/Images/Background.jpg
 
 # Change this default documentRoot if different in your installation,
 #	to allow some of the browser cgi binaries to find help text files
-browser.documentRoot=/usr/local/apache/htdocs
+#browser.documentRoot=/usr/local/apache/htdocs
 
 # optional location of grepIndex files
 # braney commented out the following like on 8/29/2012 for testing purposes
-#grepIndex.genbank=/data/tmp/grepIndex
+grepIndex.genbank=/data/tmp/grepIndex
 grepIndex.default=/gbdb
 
 #  new option for track reording functions, August 2006
 hgTracks.trackReordering=on
 
 # directory for temporary bbi file caching, default is /tmp/udcCache
 # see also: README.udc
 udc.cacheDir=../trash/udcCache
 
 # Mount point for udcFuse read-only filesystem (must be absolute path!):
 #udcFuse.mountPoint=/data/apache/trash/udcFuse
 
 # Parallel fetching of remote network resources using bigDataUrl such as trackHubs and customTracks
 # how many threads to use (set to 0 to disable)
 parallelFetch.threads=100
@@ -268,19 +268,19 @@
 #myStuff.user=readonly
 #myStuff.password=access
 #
 #db.trackDb=myStuff:trackDb,trackDb
 #db.grp=myStuffgrp,grp
 #
 
 # set browser.javaScriptDir for per-developer javascript in trees that do NOT have their own DocumentRoot
 # browser.javaScriptDir=js/<your userid here>
 
 #tell hdb.c code that this is our development server
 test.dev=on
 
 # No Sql Injection settings
 # values for level are ignore, logOnly, warn, abort
-noSqlInj.level=warn
+noSqlInj.level=abort
 # values for dumpStack are on, off
 noSqlInj.dumpStack=on