File Changes for markd

v299_base to v300_preview (2014-04-28 to 2014-05-05) v300

• src/hg/altSplice/altSplice/genePredToBed.c
  • lines changed 3, context: html, text, full: html, text
    remove uncessary noise output from programs
• src/hg/altSplice/altSplice/genePredToPsl.c
  • lines changed 3, context: html, text, full: html, text
    remove uncessary noise output from programs
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    run uniprot databases tests as part of standard test run
• src/hg/protein/makefile
  • lines changed 8, context: html, text, full: html, text
    in uniprot database, flag primary gene name to distingiush it from synonyms
• src/hg/protein/spToDb/expected/test1/gene.txt
  • lines changed 12, context: html, text, full: html, text
    in uniprot database, flag primary gene name to distingiush it from synonyms
• src/hg/protein/spToDb/spDb.sql
  • lines changed 1, context: html, text, full: html, text
    in uniprot database, flag primary gene name to distingiush it from synonyms
• src/hg/protein/spToDb/spDbTables.as
  • lines changed 1, context: html, text, full: html, text
    in uniprot database, flag primary gene name to distingiush it from synonyms
• src/hg/protein/spToDb/spToDb.c
  • lines changed 3, context: html, text, full: html, text
    in uniprot database, flag primary gene name to distingiush it from synonyms
• src/hg/utils/pslMap/pslMap.c
  • lines changed 39, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName
• src/hg/utils/pslMap/tests/expected/testMapFileWithInQName.psl
  • lines changed 17, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName
• src/hg/utils/pslMap/tests/input/gencode.blocks.qName-psl
  • lines changed 17, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName
• src/hg/utils/pslMap/tests/input/gencode.src.psl
  • lines changed 5, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName
• src/hg/utils/pslMap/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName
• src/hg/utils/pslMap/usage.txt
  • lines changed 3, context: html, text, full: html, text
    added pslMap option to limit mapping alignments to those prefixed with the cooresponding input qName