f1b12be756db6fcc33cec8bd5a5a41b2c526ac4c steve Fri May 9 12:38:35 2014 -0700 Releasing criGri1, eriEur2 and taeGut2 (redmine #6506,9419,10190) diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index e013dfc..1cacbc3 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,124 +1,201 @@

News

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- 8 May 2014 - + 09 May 2014 - + Three New Assemblies Now Available in the Genome Browser + +

+ A Genome Browser is now available for the Chinese hamster (Cricetulus griseus) + assembly released July 2013 by the Beijing Genomics Institution-Shenzhen + (BGI version C_griseus_v1.0, UCSC version criGri1). For more + information and statistics about this assembly, see the NCBI assembly record + for + C_griseus_v1.0. There are 52,711 scaffolds with a total size of 2,360,146,428 + bases. +

+ +
+ Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser + FTP server or the + Downloads page. + Please observe the conditions for use when + accessing and using these data sets. The annotation tracks for this browser were + generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the + organizations and individuals who contributed to this release. +
+ --- +
+ A Genome Browser is now available for the hedgehog (Erinaceus europaeus) + assembly released May 2012 by the Broad Institute + (Broad version EriEur2.0, UCSC version eriEur2). For more + information and statistics about this assembly, see the NCBI assembly record + for + EriEur2.0. There are 5,802 scaffolds with a total size of 2,715,720,925 + bases. +
+ +
+ Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser + FTP server or the + Downloads page. + Please observe the conditions for use when + accessing and using these data sets. The annotation tracks for this browser were + generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the + organizations and individuals who contributed to this release. +
+ --- +
+ A Genome Browser is now available for the zebra finch (Taeniopygia guttata) + assembly released February 2013 by The Genome Institute at Washington University + (WUSTL version Taeniopygia_guttata-3.2.4, UCSC version taeGut2). For more + information and statistics about this assembly, see the NCBI assembly record + for + Taeniopygia_guttata-3.2.4. There are 37,096 scaffolds with a total size of 1,232,135,591 + bases. +
+ +
+ Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser + FTP server or the + Downloads page. + Please observe the conditions for use when + accessing and using these data sets. The annotation tracks for this browser were + generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the + organizations and individuals who contributed to this release. +
+ +
+
+ 08 May 2014 - New Elephant Shark (calMil1) Assembly Now Available in the Genome Browser
- A Genome Browser is now available for the elephant shark (Callorhinchus milii) + A Genome Browser is now available for the elephant shark (Callorhinchus milii) assembly released December 2013 by the Singapore Institute of Molecular and Cell Biology (IMCB version Callorhinchus_milii-6.1.3, UCSC version calMil1). For more information and statistics about this assembly, see the NCBI assembly record for Callorhinchus_milii-6.1.3. There are 21,204 scaffolds with a total size of 974,498,586 bases.

Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser FTP server or the Downloads page. Please observe the conditions for use when accessing and using these data sets. The annotation tracks for this browser were generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to this release.

- 5 May 2014 - + 05 May 2014 - Introducing the new stacked overlay for multi-wiggle tracks
We are excited to announce the release of the new stacked overlay method for multi-wiggle tracks. This new stacked overlay method displays each graph stacked on top of each other.

Navigate to the track settings for H3K27Ac Mark on the human hg19 assembly to view this new stacked overlay method on a multi-wiggle track. On the track settings page, from the "Overlay method" drop-down menu select "stacked". Make sure that the display mode is not set to hide, and click submit.

Credit for the implementation and testing of this new feature goes to Brian Raney and Matthew Speir.

29 Apr 2014 - 100-species Conservation track re-release: We released the initial version of the 100-species Conservation track for the hg19 human assembly in November 2013. Over the past few months, we found a couple of inconsistencies and decided, for the integrity of the data, that we should rerun the computation pipeline and re-release the data. Read more

18 April 2014 - New Motif Displays and New Genome Segmentations from ENCODE: The Browser's default displayed Transcription Factor ChIP-seq track updated to the latest release, enhanced with the display of Factorbook motifs. And the Browser added Genome Segmentations from ENCODE tracks, which segment the genome into twenty-five states that were then grouped and colored to highlight predicted functional elements. Read more.