File Changes for angie

v301_preview2 to v301_base (2014-06-02 to 2014-06-09) v301

• src/hg/checkTableCoords/checkTableCoords.c
  • lines changed 7, context: html, text, full: html, text
    I found that checkTableCoords.c was skipping hg38 tables (doh!) becauseit bailed on databases with too many sequences to have split tables --
    formerly those were only the huge scaffold-based databases. For now,
    to cover hg38 with minimal change, I have increased the number of assembly
    sequences to query independently from 100 to 1000. In the longer term it
    would be better to rewrite this to use whole-table query so it could
    support all assemblies.
    
• src/hg/encode3/encodeDataWarehouse/utils/makefile
  • lines changed 11, context: html, text, full: html, text
    If USE_BAM is not set, don't compile encodeDataWarehouse utils that require samtools.
• src/hg/orthoMap/orthoMap.c
  • lines changed 3, context: html, text, full: html, text
    Mac OS X Mavericks gcc -Wall complained about double-parens in an if statementand mixing of int * (bed) and unsigned int * (genePred).