6e5ee11ca95cd971984038cf65bae00d9c898707 galt Wed Jun 4 15:40:02 2014 -0700 Since we have git, it is easy to rename errabort.c to errAbort.c without losing any history. diff --git src/cdnaAli/patSpace/findHits.c src/cdnaAli/patSpace/findHits.c index 5a63926..8765274 100644 --- src/cdnaAli/patSpace/findHits.c +++ src/cdnaAli/patSpace/findHits.c @@ -1,28 +1,28 @@ /* patSpace - cDNA alignment algorithm that occurs mostly in * pattern space (as opposed to offset space). This particular * implementation tries to stitch together small contigs in * unfinished Bacterial Artificial Chromosomes (BACs) by looking * for spanning cDNAs. A BAC is a roughly 150,000 base sequence * of genomic DNA. An unfinished BAC consists of multiple * unordered non-overlapping subsequences. */ #include "common.h" #include "hash.h" #include "obscure.h" #include "portable.h" -#include "errabort.h" +#include "errAbort.h" #include "dnautil.h" #include "dnaseq.h" #include "nt4.h" #include "fa.h" #include "fuzzyFind.h" #include "cda.h" #include "sig.h" #include "patSpace.h" #include "htmshell.h" FILE *bigHtmlFile; FILE *littleHtmlFile; int htmlIx; FILE *hitOut; /* Output file for cDNA/BAC hits. */ FILE *mergerOut; /* Output file for mergers. */