6e5ee11ca95cd971984038cf65bae00d9c898707
galt
  Wed Jun 4 15:40:02 2014 -0700
Since we have git, it is easy to rename errabort.c to errAbort.c without losing any history.
diff --git src/lib/vcfBits.c src/lib/vcfBits.c
index ccd48e2..75d3a05 100644
--- src/lib/vcfBits.c
+++ src/lib/vcfBits.c
@@ -1,29 +1,29 @@
 /* vcfBits.c/.h: Variant Call Format, analysis by bit maps.
  * The routines found here are dependent upon vcf.c/.h for accessing vcf records.
  * They allow analysis of a set of vcf records by bit maps with one bit map per variant
  * location and where each haplotype covered by the vcf record is represented by a single
  * bit (or pair of bits). Additional analysis can be performed by creating haplotype based
  * bit maps from variant bit maps.  There is one haplotype bit map for each haplotype
  * (subject chromosome) with one (or two) bits for each variant location in the set of records. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 
 #include "common.h"
 #include "dnautil.h"
-#include "errabort.h"
+#include "errAbort.h"
 #include <limits.h>
 #include "localmem.h"
 #include "net.h"
 #include "regexHelper.h"
 #include "vcf.h"
 #include "vcfBits.h"
 
 
 static struct variantBits *vcfOneRecordToVariantBits(struct vcfFile *vcff,struct vcfRecord *record,
                                                      boolean phasedOnly, boolean homozygousOnly)
 // Returns bit array covering all genotypes/haplotype/alleles per record.  One slot per genotype
 // containing 2 slots for haplotypes and 1 or 2 bits per allele. The normal (simple) case of
 // 1 reference and 1 alternate allele results in 1 allele bit with 0:ref. Two or three alt alleles
 // is represented by two bits per allele (>3 alternate alleles is unsupported).
 // If phasedOnly, unphased haplotype bits will all be set only if all agree (00 is uninterpretable)