" ); /* we need to take any HTML formatting out of the titlebar string */ newString = cloneString(textOutBuf); for(ptr1=newString, ptr2=textOutBuf; *ptr2 ; ptr2++) { if (*ptr2 == '<') { for(; *ptr2 && (*ptr2 != '>'); ptr2++) ; } else *ptr1++ = *ptr2; } *ptr1 = 0; htmlTextOut(newString); printf("

"); puts(""); puts( // TODO: Replace nested tables with CSS (difficulty is that tables are closed elsewhere) "
\n\n" " \n" "

\n" " "); } void webPrintLinkCell(char *link) /* Print link cell in our colors, if links is null, print empty cell */ { webPrintLinkCellStart(); if (link != NULL) puts(link); webPrintLinkCellEnd(); } void webPrintIntCell(int val) /* Print right-justified int cell in our colors. */ { webPrintLinkCellRightStart(); printf("%d", val); webPrintLinkCellEnd(); } void webPrintDoubleCell(double val) /* Print right-justified cell in our colors with two digits to right of decimal. */ { webPrintLinkCellRightStart(); printf("%4.2f", val); webPrintLinkCellEnd(); } void webPrintWideLabelCell(char *label, int colSpan) /* Print label cell over multiple columns in our colors. */ { printf("", label); } void webPrintWideCenteredLabelCell(char *label, int colSpan) /* Print label cell over multiple columns in our colors and centered. */ { printf("", label); } void webPrintLabelCell(char *label) /* Print label cell in our colors. */ { webPrintWideLabelCell(label, 1); } void webPrintLinkTableNewRow() /* start a new row */ { printf("\n"); } void finishPartialTable(int rowIx, int itemPos, int maxPerRow, void (*cellStart)()) /* Fill out partially empty last row. */ { if (rowIx != 0 && itemPos < maxPerRow) { int i; for (i=itemPos; i\n", link); else if (style) dyStringPrintf(wrapped,"\n", link); else // Will be image, since these are the only three choices allowed dyStringPrintf(wrapped,"

\n", link); freeMem(link); link = dyStringCannibalize(&wrapped); } return link; } char *webTimeStampedLinkToResourceOnFirstCall(char *fileName, boolean wrapInHtml) // If this is the first call, will return full path of timestamped link to the requested // resource file (js, or css). Free after use. // else returns NULL. Useful to ensure multiple references to the same resource file are not made // NOTE: png, jpg and gif should also be supported but are untested. { static struct hash *includedResourceFiles = NULL; if (!includedResourceFiles) includedResourceFiles = newHash(0); if (hashLookup(includedResourceFiles, fileName)) return NULL; char * link = webTimeStampedLinkToResource(fileName,wrapInHtml); if (link) hashAdd(includedResourceFiles, fileName, NULL); // Don't hash link, because return link; // memory will be freed by caller!!! } boolean webIncludeResourcePrintToFile(FILE * toFile, char *fileName) // Converts fileName to web Resource link and prints the html reference // This only prints and returns TRUE on first call for this resource. // Passing in NULL as the file pointer results in hPrintf call // The reference will be to a link with timestamp. { char *link = webTimeStampedLinkToResourceOnFirstCall(fileName,TRUE); if (link) { if (toFile == NULL) hPrintf("%s",link); else fprintf(toFile,"%s",link); freeMem(link); return TRUE; } return FALSE; } // overrides for default context specific help link. char *contextSpecificHelpLink = NULL; char *contextSpecificHelpLabel = NULL; void setContextSpecificHelp(char *link, char *label) // Override default behavior for the context specific help link { if(link) contextSpecificHelpLink = cloneString(link); if(label) contextSpecificHelpLabel = cloneString(label); } char *menuBar(struct cart *cart) // Return HTML for the menu bar (read from a configuration file); // we fixup internal CGI's to add hgsid's and include the appropriate js and css files. { char *docRoot = hDocumentRoot(); char *menuStr, buf[4096], uiVars[128]; FILE *fd; int len, offset, err; char *navBarFile = "inc/globalNavBar.inc"; struct stat statBuf; regex_t re; regmatch_t match[2]; char *scriptName = cgiScriptName(); if (cart) safef(uiVars, sizeof(uiVars), "%s=%s", cartSessionVarName(), cartSessionId(cart)); else uiVars[0] = 0; if(docRoot == NULL) // tolerate missing docRoot (i.e. don't bother with menu when running from command line) return NULL; jsIncludeFile("jquery.js", NULL); jsIncludeFile("jquery.plugins.js", NULL); webIncludeResourceFile("nice_menu.css"); // Read in menu bar html safef(buf, sizeof(buf), "%s/%s", docRoot, navBarFile); fd = mustOpen(buf, "r"); fstat(fileno(fd), &statBuf); len = statBuf.st_size; menuStr = needMem(len + 1); mustRead(fd, menuStr, statBuf.st_size); menuStr[len] = 0; carefulClose(&fd); if (cart) { // fixup internal CGIs to have hgsid safef(buf, sizeof(buf), "/cgi-bin/hg[A-Za-z]+(%c%c?)", '\\', '?'); err = regcomp(&re, buf, REG_EXTENDED); if(err) errAbort("regcomp failed; err: %d", err); struct dyString *dy = newDyString(0); for(offset = 0; offset < len && !regexec(&re, menuStr + offset, ArraySize(match), match, 0); offset += match[0].rm_eo) { dyStringAppendN(dy, menuStr + offset, match[0].rm_eo); if(match[1].rm_so == match[1].rm_eo) dyStringAppend(dy, "?"); dyStringAppend(dy, uiVars); if(match[1].rm_so != match[1].rm_eo) dyStringAppend(dy, "&"); } if(offset < len) dyStringAppend(dy, menuStr + offset); freez(&menuStr); menuStr = dyStringCannibalize(&dy); } if(!loginSystemEnabled()) stripRegEx(menuStr, "<\\!-- LOGIN_START -->.*<\\!-- LOGIN_END -->", REG_ICASE); if(scriptName) { // Provide optional official mirror servers menu items char *geoMenu = geoMirrorMenu(); char *pattern = ""; char *newMenuStr = replaceChars(menuStr, pattern, geoMenu); freez(&menuStr); menuStr = newMenuStr; } if(scriptName) { // Provide view menu for some CGIs. struct dyString *viewItems = dyStringCreate(""); boolean hasViewMenu = TRUE; if (endsWith(scriptName, "hgGenome")) { safef(buf, sizeof(buf), "../cgi-bin/hgGenome?%s&hgGenome_doPsOutput=1", uiVars); dyStringPrintf(viewItems, "

\n", buf, "pdfLink", "PDF/PS"); } else { hasViewMenu = FALSE; } if (hasViewMenu) { struct dyString *viewMenu = dyStringCreate("

View\n\n

\n"); menuStr = replaceChars(menuStr, "", viewMenu->string); dyStringFree(&viewMenu); } dyStringFree(&viewItems); } if(scriptName) { // Provide context sensitive help links for some CGIs. char *link = NULL; char *label = NULL; if (endsWith(scriptName, "hgBlat")) { link = "../goldenPath/help/hgTracksHelp.html#BLATAlign"; label = "Help on Blat"; } else if (endsWith(scriptName, "hgHubConnect")) { link = "../goldenPath/help/hgTrackHubHelp.html"; label = "Help on Track Hubs"; } else if (endsWith(scriptName, "hgNear")) { link = "../goldenPath/help/hgNearHelp.html"; label = "Help on Gene Sorter"; } else if (endsWith(scriptName, "hgTables")) { link = "../goldenPath/help/hgTablesHelp.html"; label = "Help on Table Browser"; } else if (endsWith(scriptName, "hgGenome")) { link = "../goldenPath/help/hgGenomeHelp.html"; label = "Help on Genome Graphs"; } else if (endsWith(scriptName, "hgSession")) { link = "../goldenPath/help/hgSessionHelp.html"; label = "Help on Sessions"; } else if (endsWith(scriptName, "hgVisiGene")) { link = "../goldenPath/help/hgTracksHelp.html#VisiGeneHelp"; label = "Help on VisiGene"; } else if (endsWith(scriptName, "hgCustom")) { link = "../goldenPath/help/customTrack.html"; label = "Help on Custom Tracks"; } // Don't overwrite any previously set defaults if(!contextSpecificHelpLink && link) contextSpecificHelpLink = link; if(!contextSpecificHelpLabel && label) contextSpecificHelpLabel = label; } if(contextSpecificHelpLink) { char buf[1024]; safef(buf, sizeof(buf), "

", contextSpecificHelpLink, contextSpecificHelpLabel); menuStr = replaceChars(menuStr, "", buf); } return menuStr; }

\n"); if (hasTitle) puts("

"); else puts("

"); } void webNewSectionHeaderEnd() /* Properly close header of collapsible section on web page */ { puts("

\n" " " "\n" "

\n\n"); } void webNewSection(char* format, ...) /* create a new section on the web page */ { va_list args; va_start(args, format); webNewSectionHeaderStart(TRUE); vprintf(format, args); webNewSectionHeaderEnd(); va_end(args); } void webNewEmptySection() /* create a new section on the web page to maintain table layout */ { webNewSectionHeaderStart(FALSE); webNewSectionHeaderEnd(); } void webEndSectionTables() /* Finish with section tables (but don't do /BODY /HTML like * webEnd does. */ { webEndSection(); puts("

\n"); } void webEnd() /* output the footer of the HTML page */ { if(!webInTextMode) { webEndSectionTables(); #ifndef GBROWSE googleAnalytics(); #endif /* GBROWSE */ puts( ""); webPopErrHandlers(); } } static boolean gotWarnings = FALSE; void webVaWarn(char *format, va_list args) /* Warning handler that closes out page and stuff in * the fancy form. */ { gotWarnings = TRUE; boolean needStart = !webHeadAlreadyOutputed; if (needStart) { // All callers of this (via webPushErrHandlersCartDb) have skipped Content-type // because they want to output text unless we hit this condition: puts("Content-type:text/html\n"); cartWebStart(errCart, errDb, "Error"); } htmlVaWarn(format, args); printf("\n\n\n\n"); } boolean webGotWarnings() /* Return TRUE if webVaWarn has been called. */ { return gotWarnings; } void webAbort(char* title, char* format, ...) /* an abort function that outputs a error page */ { va_list args; va_start(args, format); /* output the header */ if(!webHeadAlreadyOutputed) webStart(errCart, NULL, title); /* in text mode, have a different error */ if(webInTextMode) printf("\n\n\n %s\n\n", title); vprintf(format, args); printf("\n"); printf("\n\n"); webEnd(); va_end(args); exit(0); } void printCladeListHtml(char *genome, char *onChangeText) /* Make an HTML select input listing the clades. */ { char **row = NULL; char *clades[128]; char *labels[128]; char *defaultClade = hClade(genome); char *defaultLabel = NULL; int numClades = 0; struct sqlConnection *conn = hConnectCentral(); // after hClade since it access hgcentral too // get only the clades that have actual active genomes struct sqlResult *sr = sqlGetResult(conn, "NOSQLINJ SELECT DISTINCT(c.name), c.label FROM clade c, genomeClade g, dbDb d WHERE c.name=g.clade AND d.organism=g.genome AND d.active=1 ORDER BY c.priority"); while ((row = sqlNextRow(sr)) != NULL) { clades[numClades] = cloneString(row[0]); labels[numClades] = cloneString(row[1]); if (sameWord(defaultClade, clades[numClades])) defaultLabel = clades[numClades]; numClades++; if (numClades >= ArraySize(clades)) internalErr(); } sqlFreeResult(&sr); hDisconnectCentral(&conn); struct slPair *names = trackHubGetCladeLabels(); for(; names; names = names->next) { clades[numClades] = names->name; labels[numClades] = names->val; if (sameWord(defaultClade, clades[numClades])) defaultLabel = clades[numClades]; numClades++; if (numClades >= ArraySize(clades)) internalErr(); } cgiMakeDropListFull(cladeCgiName, labels, clades, numClades, defaultLabel, onChangeText); } static void printSomeGenomeListHtmlNamedMaybeCheck(char *customOrgCgiName, char *db, struct dbDb *dbList, char *onChangeText, boolean doCheck) /* Prints to stdout the HTML to render a dropdown list * containing a list of the possible genomes to choose from. * param db - a database whose genome will be the default genome. * If NULL, no default selection. * param onChangeText - Optional (can be NULL) text to pass in * any onChange javascript. */ { char *orgList[1024]; int numGenomes = 0; struct dbDb *cur = NULL; struct hash *hash = hashNew(10); // 2^^10 entries = 1024 char *selGenome = hGenomeOrArchive(db); char *values [1024]; char *cgiName; for (cur = dbList; cur != NULL; cur = cur->next) { if (!hashFindVal(hash, cur->genome) && (!doCheck || hDbExists(cur->name))) { hashAdd(hash, cur->genome, cur); orgList[numGenomes] = trackHubSkipHubName(cur->genome); values[numGenomes] = cur->genome; numGenomes++; if (numGenomes >= ArraySize(orgList)) internalErr(); } } cgiName = (customOrgCgiName != NULL) ? customOrgCgiName : orgCgiName; cgiMakeDropListFull(cgiName, orgList, values, numGenomes, selGenome, onChangeText); hashFree(&hash); } void printSomeGenomeListHtmlNamed(char *customOrgCgiName, char *db, struct dbDb *dbList, char *onChangeText) /* Prints to stdout the HTML to render a dropdown list * containing a list of the possible genomes to choose from. * param db - a database whose genome will be the default genome. * If NULL, no default selection. * param onChangeText - Optional (can be NULL) text to pass in * any onChange javascript. */ { return printSomeGenomeListHtmlNamedMaybeCheck(customOrgCgiName, db, dbList, onChangeText, TRUE); } void printLiftOverGenomeList(char *customOrgCgiName, char *db, struct dbDb *dbList, char *onChangeText) /* Prints to stdout the HTML to render a dropdown list * containing a list of the possible genomes to choose from. * Databases in dbList do not have to exist. * param db - a database whose genome will be the default genome. * If NULL, no default selection. * param onChangeText - Optional (can be NULL) text to pass in * any onChange javascript. */ { return printSomeGenomeListHtmlNamedMaybeCheck(customOrgCgiName, db, dbList, onChangeText, FALSE); } void printSomeGenomeListHtml(char *db, struct dbDb *dbList, char *onChangeText) /* Prints the dropdown list using the orgCgiName */ { printSomeGenomeListHtmlNamed(NULL, db, dbList, onChangeText); } void printGenomeListHtml(char *db, char *onChangeText) /* Prints to stdout the HTML to render a dropdown list * containing a list of the possible genomes to choose from. * param db - a database whose genome will be the default genome. * If NULL, no default selection. * param onChangeText - Optional (can be NULL) text to pass in * any onChange javascript. */ { printSomeGenomeListHtml(db, hGetIndexedDatabases(), onChangeText); } void printBlatGenomeListHtml(char *db, char *onChangeText) /* Prints to stdout the HTML to render a dropdown list * containing a list of the possible genomes to choose from. * param db - a database whose genome will be the default genome. * If NULL, no default selection. * param onChangeText - Optional (can be NULL) text to pass in * any onChange javascript. */ { printSomeGenomeListHtml(db, hGetBlatIndexedDatabases(), onChangeText); } void printGenomeListForCladeHtml(char *db, char *onChangeText) /* Prints to stdout the HTML to render a dropdown list containing * a list of the possible genomes from selOrganism's clade to choose from. * selOrganism is the default for the select. */ { printSomeGenomeListHtml(db, hGetIndexedDatabasesForClade(db), onChangeText); } void printAllAssemblyListHtmlParm(char *db, struct dbDb *dbList, char *dbCgi, bool allowInactive, char *javascript) /* Prints to stdout the HTML to render a dropdown list containing the list * of assemblies for the current genome to choose from. By default, * this includes only active assemblies with a database (with the * exception of the default assembly, which will be included even * if it isn't active). * param db - The default assembly (the database name) to choose as selected. * If NULL, no default selection. * param allowInactive - if set, print all assemblies for this genome, * even if they're inactive or have no database */ { char *assemblyList[128]; char *values[128]; int numAssemblies = 0; struct dbDb *cur = NULL; char *genome = hGenomeOrArchive(db); char *selAssembly = NULL; if (genome == NULL) #ifdef LOWELAB genome = "Pyrococcus furiosus"; #else genome = "Human"; #endif for (cur = dbList; cur != NULL; cur = cur->next) { /* Only for this genome */ if (!sameWord(genome, cur->genome)) continue; /* Save a pointer to the current assembly */ if (sameWord(db, cur->name)) selAssembly = cur->name; if (allowInactive || ((cur->active || sameWord(cur->name, db)) && (trackHubDatabase(db) || sqlDatabaseExists(cur->name)))) { assemblyList[numAssemblies] = cur->description; values[numAssemblies] = cur->name; numAssemblies++; if (numAssemblies >= ArraySize(assemblyList)) internalErr(); } } cgiMakeDropListFull(dbCgi, assemblyList, values, numAssemblies, selAssembly, javascript); } void printSomeAssemblyListHtmlParm(char *db, struct dbDb *dbList, char *dbCgi, char *javascript) /* Find all the assemblies from the list that are active. * Prints to stdout the HTML to render a dropdown list containing the list * of the possible assemblies to choose from. * param db - The default assembly (the database name) to choose as selected. * If NULL, no default selection. */ { printAllAssemblyListHtmlParm(db, dbList, dbCgi, TRUE, javascript); } void printSomeAssemblyListHtml(char *db, struct dbDb *dbList, char *javascript) /* Find all assemblies from the list that are active, and print * HTML to render dropdown list * param db - default assembly. If NULL, no default selection */ { printSomeAssemblyListHtmlParm(db, dbList, dbCgiName, javascript); } void printAssemblyListHtml(char *db, char *javascript) /* Find all the assemblies that pertain to the selected genome * Prints to stdout the HTML to render a dropdown list containing * a list of the possible assemblies to choose from. * Param db - The assembly (the database name) to choose as selected. * If NULL, no default selection. */ { struct dbDb *dbList = hGetIndexedDatabases(); printSomeAssemblyListHtml(db, dbList, javascript); } void printAssemblyListHtmlExtra(char *db, char *javascript) { /* Find all the assemblies that pertain to the selected genome Prints to stdout the HTML to render a dropdown list containing a list of the possible assemblies to choose from. param curDb - The assembly (the database name) to choose as selected. If NULL, no default selection. */ struct dbDb *dbList = hGetIndexedDatabases(); printSomeAssemblyListHtmlParm(db, dbList, dbCgiName, javascript); } void printBlatAssemblyListHtml(char *db) { /* Find all the assemblies that pertain to the selected genome Prints to stdout the HTML to render a dropdown list containing a list of the possible assemblies to choose from. param curDb - The assembly (the database name) to choose as selected. If NULL, no default selection. */ struct dbDb *dbList = hGetBlatIndexedDatabases(); printSomeAssemblyListHtml(db, dbList, NULL); } void printOrgAssemblyListAxtInfo(char *dbCgi, char *javascript) /* Find all the organisms/assemblies that are referenced in axtInfo, * and print the dropdown list. */ { struct dbDb *dbList = hGetAxtInfoDbs(dbCgi); char *assemblyList[128]; char *values[128]; int numAssemblies = 0; struct dbDb *cur = NULL; char *assembly = cgiOptionalString(dbCgi); char orgAssembly[256]; for (cur = dbList; ((cur != NULL) && (numAssemblies < 128)); cur = cur->next) { safef(orgAssembly, sizeof(orgAssembly), "%s %s", cur->organism, cur->description); assemblyList[numAssemblies] = cloneString(orgAssembly); values[numAssemblies] = cur->name; numAssemblies++; } #ifdef OLD // Have to use the "menu" name, not the value, to mark selected: if (assembly != NULL) { char *selOrg = hOrganism(assembly); char *selFreeze = hFreezeFromDb(assembly); safef(orgAssembly, sizeof(orgAssembly), "%s %s", selOrg, selFreeze); assembly = cloneString(orgAssembly); } #endif /* OLD */ cgiMakeDropListFull(dbCgi, assemblyList, values, numAssemblies, assembly, javascript); } static char *getDbForGenome(char *genome, struct cart *cart) /* Function to find the default database for the given Genome. It looks in the cart first and then, if that database's Genome matches the passed-in Genome, returns it. If the Genome does not match, it returns the default database that does match that Genome. param Genome - The Genome for which to find a database param cart - The cart to use to first search for a suitable database name return - The database matching this Genome type */ { char *retDb = cartUsualString(cart, dbCgiName, NULL); if ((retDb == NULL) || !hDbExists(retDb)) { retDb = hDefaultDb(); } /* If genomes don't match, then get the default db for that genome */ if (differentWord(genome, hGenome(retDb))) { retDb = hDefaultDbForGenome(genome); } return retDb; } void getDbGenomeClade(struct cart *cart, char **retDb, char **retGenome, char **retClade, struct hash *oldVars) /* Examine CGI and cart variables to determine which db, genome, or clade * has been selected, and then adjust as necessary so that all three are * consistent. Detect changes and reset db-specific cart variables. * Save db, genome and clade in the cart so it will be consistent hereafter. * The order of preference here is as follows: * If we got a request that explicitly names the db, that takes * highest priority, and we synch the organism to that db. * If we get a cgi request for a specific organism then we use that * organism to choose the DB. If just clade, go from there. * In the cart only, we use the same order of preference. * If someone requests an Genome we try to give them the same db as * was in their cart, unless the Genome doesn't match. */ { boolean gotClade = hGotClade(); *retDb = cgiOptionalString(dbCgiName); *retGenome = cgiOptionalString(orgCgiName); *retClade = cgiOptionalString(cladeCgiName); /* Was the database passed in as a cgi param? * If so, it takes precedence and determines the genome. */ if (*retDb && hDbExists(*retDb)) { *retGenome = hGenome(*retDb); } /* If no db was passed in as a cgi param then was the organism (a.k.a. genome) * passed in as a cgi param? * If so, the we use the proper database for that genome. */ else if (*retGenome && !sameWord(*retGenome, "0")) { *retDb = getDbForGenome(*retGenome, cart); *retGenome = hGenome(*retDb); } else if (*retClade && gotClade) { *retGenome = hDefaultGenomeForClade(*retClade); *retDb = getDbForGenome(*retGenome, cart); } /* If no cgi params passed in then we need to inspect the session */ else { *retDb = cartOptionalString(cart, dbCgiName); *retGenome = cartOptionalString(cart, orgCgiName); *retClade = cartOptionalString(cart, cladeCgiName); /* If there was a db found in the session that determines everything. */ if (*retDb && hDbExists(*retDb)) { *retGenome = hGenome(*retDb); } else if (*retGenome && !sameWord(*retGenome, "0")) { *retDb = hDefaultDbForGenome(*retGenome); } else if (*retClade && gotClade) { *retGenome = hDefaultGenomeForClade(*retClade); *retDb = getDbForGenome(*retGenome, cart); } /* If no organism in the session then get the default db and organism. */ else { *retDb = hDefaultDb(); *retGenome = hGenome(*retDb); } } *retDb = cloneString(*retDb); *retGenome = cloneString(*retGenome); *retClade = hClade(*retGenome); /* Detect change of database and reset db-specific cart variables: */ if (oldVars) { char *oldDb = hashFindVal(oldVars, "db"); char *oldOrg = hashFindVal(oldVars, "org"); char *oldClade = hashFindVal(oldVars, "clade"); if ((!IS_CART_VAR_EMPTY(oldDb) && differentWord(oldDb, *retDb)) || (!IS_CART_VAR_EMPTY(oldOrg) && differentWord(oldOrg, *retGenome)) || (!IS_CART_VAR_EMPTY(oldClade) && differentWord(oldClade, *retClade))) { /* Change position to default -- unless it was passed in via CGI: */ if (cgiOptionalString("position") == NULL) cartSetString(cart, "position", hDefaultPos(*retDb)); /* hgNear search term -- unless it was passed in via CGI: */ if (cgiOptionalString("near_search") == NULL) cartRemove(cart, "near_search"); /* hgBlat results (hgUserPsl track): */ cartRemove(cart, "ss"); /* hgTables correlate: */ cartRemove(cart, "hgta_correlateTrack"); cartRemove(cart, "hgta_correlateTable"); cartRemove(cart, "hgta_correlateGroup"); cartRemove(cart, "hgta_correlateOp"); cartRemove(cart, "hgta_nextCorrelateTrack"); cartRemove(cart, "hgta_nextCorrelateTable"); cartRemove(cart, "hgta_nextCorrelateGroup"); cartRemove(cart, "hgta_nextCorrelateOp"); cartRemove(cart, "hgta_corrWinSize"); cartRemove(cart, "hgta_corrMaxLimitCount"); } } /* Save db, genome (as org) and clade in cart. */ cartSetString(cart, "db", *retDb); cartSetString(cart, "org", *retGenome); if (gotClade) cartSetString(cart, "clade", *retClade); } void getDbAndGenome(struct cart *cart, char **retDb, char **retGenome, struct hash *oldVars) /* Get just the db and genome. */ { char *garbage = NULL; getDbGenomeClade(cart, retDb, retGenome, &garbage, oldVars); freeMem(garbage); } void webIncludeFile(char *file) /* Include an HTML file in a CGI. * The file path may begin with hDocumentRoot(); if it doesn't, it is * assumed to be relative and hDocumentRoot() will be prepended. */ { char *str = hFileContentsOrWarning(file); puts(str); freeMem(str); } void webIncludeHelpFile(char *fileRoot, boolean addHorizLine) /* Given a help file root name (e.g. "hgPcrResult" or "cutters"), * print out the contents of the file. If addHorizLine, print out an *

first. */ { if (addHorizLine) htmlHorizontalLine(); webIncludeFile(hHelpFile(fileRoot)); } void webPrintLinkTableStart() /* Print link table start in our colors. */ { printf("

\n"); printf("\n"); } void webPrintLinkTableEnd() /* Print link table end in our colors. */ { printf("

\n"); printf("

\n"); } void webPrintLinkOutCellStart() /* Print link cell that goes out of our site. End with * webPrintLinkTableEnd. */ { printf("

"); } void webPrintWideCellStart(int colSpan, char *bgColorRgb) /* Print link multi-column cell start in our colors. */ { printf("

1) printf(" COLSPAN=%d", colSpan); printf(">"); } void webPrintLinkCellStart() /* Print link cell start in our colors. */ { webPrintWideCellStart(1, HG_COL_TABLE); } void webPrintLinkCellRightStart() /* Print right-justified cell start in our colors. */ { printf("

"); } void webPrintLinkCellEnd() /* Print link cell end in our colors. */ { printf("

1) printf(" COLSPAN=%d", colSpan); printf(">%s

" " You've been redirected to your nearest mirror - %s" "[x]" "