Commits for hiram

v301_preview2 to v301_base (2014-06-02 to 2014-06-09) v301

• correctly remove symlink before making perhaps a new one refs #13300
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 1, context: html, text, full: html, text
• phylo tree for hg38 7way refs #13300
  • src/hg/htdocs/images/phylo/hg38_7way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• initial 7-way alignment completed refs #13300
  • src/hg/makeDb/doc/hg38.txt - lines changed 283, context: html, text, full: html, text
• correct finding libraries on Mavericks with homebrew mysql install refs #12209
  • src/inc/common.mk - lines changed 24, context: html, text, full: html, text
• annotation and frames added to 7-way refs #13300
  • src/hg/makeDb/doc/hg38.txt - lines changed 235, context: html, text, full: html, text
• turning on 7-way conservation track refs #13300
  • src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra - lines changed 104, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• completed 4D 7-way prediction refs #13300
  • src/hg/makeDb/doc/hg38.txt - lines changed 117, context: html, text, full: html, text
• updated list of top-level trackDb files to enable the make of trackDb refs #13300
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 8, context: html, text, full: html, text
• add wiki pages for rn5 13-way refs #8212
  • src/hg/makeDb/doc/rn5.txt - lines changed 28, context: html, text, full: html, text
• initial contents 7way description refs #13300
  • src/hg/makeDb/trackDb/human/hg38/cons7way.html - lines changed 392, context: html, text, full: html, text
• completed 7-way alignment refs #13300
  • src/hg/makeDb/doc/hg38.txt - lines changed 649, context: html, text, full: html, text
• human incidents now come from a different directory refs #12407
  • src/hg/makeDb/trackDb/human/grcIncidentDb.html - lines changed 25, context: html, text, full: html, text
• alignment downloads constructed for the 7-way refs #13300
  • src/hg/makeDb/doc/hg38.txt - lines changed 110, context: html, text, full: html, text
• v301 final build refs #13189
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• can have USE_SSL=0 to avoid some lib links in the blat build refs #13189
  • src/utils/qa/weeklybld/downloadBuildSettings.mk - lines changed 1, context: html, text, full: html, text
• New version number v301
  • src/hg/inc/versionInfo.h - lines changed 4, context: html, text, full: html, text