e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/agpMergeChromScaf/agpMergeChromScaf.c src/hg/agpMergeChromScaf/agpMergeChromScaf.c index 09b7335..bdfe4b3 100644 --- src/hg/agpMergeChromScaf/agpMergeChromScaf.c +++ src/hg/agpMergeChromScaf/agpMergeChromScaf.c @@ -1,15 +1,18 @@ +/* Copyright (C) 2011 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + /* agpMergeChromScaf - Combines chrom.agp and scaffold.agp * Galt Barber 2009-06-19 * Produces a combined agp file from the chrom.agp and * scaffold.agp, merging only scaffolds from scaffold.agp * that are not already in chrom.agp. * This is being developed for Zv8 (and the same structure was in Zv7). * The mapping of scaffold to chrom is enabled through * the sanger hack of renaming all the contigs in the * agp and contig.fa to names like scaffold99.1, scaffold99.2 * which is the only way we know which scaffolds are * involved in which chromosomes. * One of the major goals here is to preserve the detailed * gap structure of contigs even inside the chrom. */ #include "common.h"