e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/agpSangerUnfinished/agpSangerUnfinished.c src/hg/agpSangerUnfinished/agpSangerUnfinished.c
index f9e8aa9..8de8828 100644
--- src/hg/agpSangerUnfinished/agpSangerUnfinished.c
+++ src/hg/agpSangerUnfinished/agpSangerUnfinished.c
@@ -1,15 +1,18 @@
+/* Copyright (C) 2011 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 /* agpSangerUnfinished - Fixes chrom.agp or scaffold.agp 
  *  Galt Barber 2009-06-22
  *  Produces an agp file that matches the unfinished contig names 
  *  that are found in contigs.fa.
  *  Apparently Sanger wants to use these unfinished ones
  *  but they are not allowed to submit them to Genbank.
  *  So the agp matches the genbank record, but the fasta
  *  file does not.  
  *  The needed information is actually in the files,
  *  but it is stored in a completely non-standard way.
  *  So, we change the frag names in the agp to match
  *  the fasta, and we use the frag start and end 
  *  also in the matching.  The final agp frag start and end
  *  for these must be modified to be 1, size-of-frag
  *  This is being developed for Zv8 (and the same structure was in Zv7).