e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/lib/annoStreamVcf.c src/lib/annoStreamVcf.c index 141c33f..2c15149 100644 --- src/lib/annoStreamVcf.c +++ src/lib/annoStreamVcf.c @@ -1,17 +1,20 @@ /* annoStreamVcf -- subclass of annoStreamer for VCF files */ +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #include "annoStreamVcf.h" #include "twoBit.h" #include "vcf.h" struct annoStreamVcf { struct annoStreamer streamer; // Parent class members & methods // Private members struct vcfFile *vcff; // VCF parsed header and file object struct vcfRecord *record; // Current parsed row of VCF (need this for chromEnd) char *asWords[VCF_NUM_COLS]; // Current row of VCF with genotypes squashed for autoSql struct dyString *dyGt; // Scratch space for squashing genotype columns struct hash *chromNameHash; // Translate "chr"-less seq names if necessary. struct annoRow *indelQ; // FIFO for coord-tweaked indels, to maintain sorting struct annoRow *nextPosQ; // FIFO (max len=1) for stashing row while draining indelQ