e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/lib/vcfBits.c src/lib/vcfBits.c
index c1dc612..ccd48e2 100644
--- src/lib/vcfBits.c
+++ src/lib/vcfBits.c
@@ -1,23 +1,26 @@
 /* vcfBits.c/.h: Variant Call Format, analysis by bit maps.
  * The routines found here are dependent upon vcf.c/.h for accessing vcf records.
  * They allow analysis of a set of vcf records by bit maps with one bit map per variant
  * location and where each haplotype covered by the vcf record is represented by a single
  * bit (or pair of bits). Additional analysis can be performed by creating haplotype based
  * bit maps from variant bit maps.  There is one haplotype bit map for each haplotype
  * (subject chromosome) with one (or two) bits for each variant location in the set of records. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "dnautil.h"
 #include "errabort.h"
 #include <limits.h>
 #include "localmem.h"
 #include "net.h"
 #include "regexHelper.h"
 #include "vcf.h"
 #include "vcfBits.h"
 
 
 static struct variantBits *vcfOneRecordToVariantBits(struct vcfFile *vcff,struct vcfRecord *record,
                                                      boolean phasedOnly, boolean homozygousOnly)
 // Returns bit array covering all genotypes/haplotype/alleles per record.  One slot per genotype
 // containing 2 slots for haplotypes and 1 or 2 bits per allele. The normal (simple) case of