e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/utils/cpgIslandExt/cpg.c src/utils/cpgIslandExt/cpg.c index 0afb018..52b6215 100644 --- src/utils/cpgIslandExt/cpg.c +++ src/utils/cpgIslandExt/cpg.c @@ -1,15 +1,18 @@ +/* Copyright (C) 2012 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + /* Last edited: Jun 23 19:33 1995 (gos) */ /* cpg.c: CpG island finder. Larsen et al Genomics 13 1992 p1095-1107 "usually defined as >200bp with %GC > 50% and obs/exp CpG > 0.6". Here use running sum rather than window to score: if not CpG at postion i, then decrement runSum counter, but if CpG then runSum += CPGSCORE. Spans > threshold are searched for recursively. filename: fasta format concatenated sequence file: */ /*********************************************************