e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c index efeb3f1..e2ca8e4 100644 --- src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c +++ src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c @@ -1,15 +1,18 @@ +/* Copyright (C) 2011 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + /* scaffoldFaToAgp - read a file containing FA scaffold records and generate */ /* an AGP file, gap file and a lift file */ /* This utility is used when working with genomes that consist * of scaffolds with no chromosome mapping (e.g. Fugu). * The AGP file contains scaffolds and inter-scaffold gaps. * This file is used to generate the assembly ("gold") track. * The "gap" file contains gaps within scaffolds as well * as inter-scaffold gaps. This file is used to generate the "gap" track. * It is formatted similarly to an AGP, but only contains gap entries. * The lift file is associated with the AGP file. It is used to * lift scaffold coordinates to chromosome coordinates. */ #include "common.h" #include "fa.h"