e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/bedThickOnly/bedThickOnly.c src/hg/bedThickOnly/bedThickOnly.c
index 6a2c1a3..3c1059e 100644
--- src/hg/bedThickOnly/bedThickOnly.c
+++ src/hg/bedThickOnly/bedThickOnly.c
@@ -1,68 +1,71 @@
 /* bedThickOnly - Reduce bed to just thick parts.. */
+
+/* Copyright (C) 2011 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "bed.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "bedThickOnly - Reduce bed to just thick parts.\n"
   "usage:\n"
   "   bedThickOnly in.bed out.bed\n"
   "options:\n"
   "   -xxx=XXX\n"
   );
 }
 
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
 void thickOnly(char *inBed, char *outBed)
 /* thickOnly - Reduce bed to just thick parts.. */
 {
 struct lineFile *lf = lineFileOpen(inBed, TRUE);
 FILE *f = mustOpen(outBed, "w");
 char *row[bedKnownFields+1];
 int firstSize = 0;
 int size;
 while ((size = lineFileChop(lf, row)) != 0)
     {
     if (firstSize == 0)
 	{
 	if (size > bedKnownFields)
 	    errAbort("Too many fields (%d) in bed", size);
 	else if (size < 3)
 	    errAbort("Not enough fields (%d) in bed", size);
         firstSize = size;
 	}
     else
         {
 	if (size != firstSize)
 	    lineFileExpectWords(lf, firstSize, size);
 	}
     struct bed *in = bedLoadN(row, size);
     struct bed *out = bedThickOnly(in);
     if (out != NULL)
 	{
 	bedTabOutN(out, size, f);
 	bedFree(&out);
 	}
     bedFree(&in);
     }
 carefulClose(&f);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 thickOnly(argv[1], argv[2]);
 return 0;
 }