e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/hgGenome/wiggle.c src/hg/hgGenome/wiggle.c index b0faf56..7c10f98 100644 --- src/hg/hgGenome/wiggle.c +++ src/hg/hgGenome/wiggle.c @@ -1,100 +1,103 @@ /* wiggle - stuff to process wiggle tracks. * Much of this is lifted from hgText/hgWigText.c */ +/* Copyright (C) 2011 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #include "common.h" #include "hash.h" #include "linefile.h" #include "dystring.h" #include "portable.h" #include "obscure.h" #include "jksql.h" #include "cheapcgi.h" #include "cart.h" #include "web.h" #include "bed.h" #include "hdb.h" #include "hui.h" #include "hgColors.h" #include "trackDb.h" #include "customTrack.h" #include "wiggle.h" #include "correlate.h" #include "hgGenome.h" boolean isWiggle(char *db, char *table) /* Return TRUE if db.table is a wiggle. */ { boolean typeWiggle = FALSE; if (db != NULL && table != NULL) { if (isCustomTrack(table)) { struct customTrack *ct = lookupCt(table); if (ct->wiggle) typeWiggle = TRUE; } else { struct hTableInfo *hti = maybeGetHti(db, table); typeWiggle = (hti != NULL && HTI_IS_WIGGLE); } } return(typeWiggle); } struct wiggleDataStream *wigChromRawStats(char *chrom) /* Fetch stats for wig data in chrom. * Returns a wiggleDataStream, free it with wiggleDataStreamFree() */ { char splitTableOrFileName[256]; struct customTrack *ct = NULL; boolean isCustom = FALSE; struct wiggleDataStream *wds = NULL; int operations = wigFetchRawStats; char *table = curTable; /* ct, isCustom, wds are set here */ if (isCustomTrack(table)) { ct = lookupCt(table); isCustom = TRUE; if (! ct->wiggle) errAbort("called to work on a custom track '%s' that isn't wiggle data ?", table); if (ct->dbTrack) safef(splitTableOrFileName,ArraySize(splitTableOrFileName), "%s", ct->dbTableName); else safef(splitTableOrFileName,ArraySize(splitTableOrFileName), "%s", ct->wigFile); } wds = wiggleDataStreamNew(); wds->setChromConstraint(wds, chrom); if (isCustom) { if (ct->dbTrack) wds->getData(wds, CUSTOM_TRASH, splitTableOrFileName, operations); else wds->getData(wds, NULL, splitTableOrFileName, operations); } else { boolean hasBin = FALSE; if (hFindSplitTable(database, chrom, table, splitTableOrFileName, &hasBin)) { wds->getData(wds, database, splitTableOrFileName, operations); } } return wds; }