e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/hgc/geneReviewsClick.c src/hg/hgc/geneReviewsClick.c index 2f4321c..4be3578 100644 --- src/hg/hgc/geneReviewsClick.c +++ src/hg/hgc/geneReviewsClick.c @@ -1,114 +1,117 @@ /* geneReviewsClick - hgc code to display geneReviews track item detail page */ + +/* Copyright (C) 2014 The Regents of the University of California + * See README in this or parent directory for licensing information. */ #include "common.h" #include "hgc.h" #include "geneReviewsClick.h" void doGeneReviews(struct trackDb *tdb, char *itemName) /* generate the detail page for geneReviews */ { struct sqlConnection *conn = hAllocConn(database); //char *table = tdb->table; int start = cartInt(cart, "o"); int num = 4; genericHeader(tdb, itemName); genericBedClick(conn, tdb, itemName, start, num); prGeneReviews(conn, itemName); printf("<BR>"); printTrackHtml(tdb); hFreeConn(&conn); } void prGeneReviews(struct sqlConnection *conn, char *itemName) /* print GeneReviews associated to this item Note: this print function has been replaced by addGeneReviewToBed.pl which print the same information to the field 5 of bigBed file */ { struct sqlResult *sr; char **row; char query[512]; int i; char *clickMsg = "Click GR short name link to find the GeneReviews article on NCBI Bookshelf."; char *spacer = " "; boolean firstTime = TRUE; if (!sqlTableExists(conn, "geneReviewsDetail")) return; sqlSafef(query, sizeof(query), "select grShort, NBKid, grTitle from geneReviewsDetail where geneSymbol='%s'", itemName); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { char *grShort = *row++; char *NBKid = *row++; char *grTitle = *row++; if (firstTime) { printf("<BR><B> GeneReviews available for %s:</B> (%s)<BR>",itemName,clickMsg); firstTime = FALSE; printf("<PRE><TT>"); // #123456789-123456789-123456789-123456789-123456789-123456789- printf("GR short name Disease name<BR>"); printf("---------------------------------------------------------"); printf("--------------------<BR>"); } printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/%s\" TARGET=_blank><B>%s</B></A>", NBKid, grShort); if (strlen(grShort) <= 20) { for (i = 0; i < 20-strlen(grShort); i ++ ) { printf("%s", " " ); } } printf("%s%s<BR>", spacer, grTitle); // printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/%s\" TARGET=_blank><B>%s</B></A>%s%s<BR>", NBKid, NBKid, spacer, grTitle); } /* end while */ printf("</TT></PRE>"); sqlFreeResult(&sr); } /* end of prGeneReviews */ void prGRShortRefGene(char *itemName) /* print GeneReviews short label associated to this refGene item */ { struct sqlConnection *conn = hAllocConn(database); struct sqlResult *sr; char **row; char query[512]; boolean firstTime = TRUE; if (!sqlTableExists(conn, "geneReviewsDetail")) return; sqlSafef(query, sizeof(query), "select grShort, NBKid, grTitle from geneReviewsDetail where geneSymbol='%s'", itemName); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { char *grShort = *row++; char *NBKid = *row++; char *grTitle = *row++; if (firstTime) { printf("<B>Related GeneReviews disease(s): </B>"); firstTime = FALSE; printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/%s\" TARGET=_blank><B>%s</B></A>", NBKid, grShort); printf(" ("); printf("%s", grTitle); printf(")"); } else { printf(", "); printf("<A HREF=\"http://www.ncbi.nlm.nih.gov/books/n/gene/%s\" TARGET=_blank><B>%s</B></A>", grShort, grShort); printf(" ("); printf("%s", grTitle); printf(")"); } } printf("<BR>"); sqlFreeResult(&sr); } /* end of prGRShortRefGene */