e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/alignInfo.h src/hg/inc/alignInfo.h
index 8393ddb..d206c8e 100644
--- src/hg/inc/alignInfo.h
+++ src/hg/inc/alignInfo.h
@@ -1,71 +1,74 @@
 /* alignInfo.h was originally generated by the autoSql program, which also 
  * generated alignInfo.c and alignInfo.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2009 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef ALIGNINFO_H
 #define ALIGNINFO_H
 
 #define ALIGNINFO_NUM_COLS 11
 
 struct alignInfo
 /* Aligned Features Description */
     {
     struct alignInfo *next;  /* Next in singly linked list. */
     char *chrom;	/* chromosome */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* hit name */
     unsigned score;	/* Score from 900-1000.  1000 is best */
     char strand[2];	/* Value should be + or - */
     unsigned hasmatch;	/* If it has match in aligned species */
     char *orgn;	/* aligned organism */
     char *alignChrom;	/* chromosome for aligned species */
     unsigned alignChromStart;	/* Start position in chromosome for aligned species */
     unsigned alignChromEnd;	/* End position in chromosome for aligned species */
     };
 
 void alignInfoStaticLoad(char **row, struct alignInfo *ret);
 /* Load a row from alignInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct alignInfo *alignInfoLoad(char **row);
 /* Load a alignInfo from row fetched with select * from alignInfo
  * from database.  Dispose of this with alignInfoFree(). */
 
 struct alignInfo *alignInfoLoadAll(char *fileName);
 /* Load all alignInfo from whitespace-separated file.
  * Dispose of this with alignInfoFreeList(). */
 
 struct alignInfo *alignInfoLoadAllByChar(char *fileName, char chopper);
 /* Load all alignInfo from chopper separated file.
  * Dispose of this with alignInfoFreeList(). */
 
 #define alignInfoLoadAllByTab(a) alignInfoLoadAllByChar(a, '\t');
 /* Load all alignInfo from tab separated file.
  * Dispose of this with alignInfoFreeList(). */
 
 struct alignInfo *alignInfoCommaIn(char **pS, struct alignInfo *ret);
 /* Create a alignInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new alignInfo */
 
 void alignInfoFree(struct alignInfo **pEl);
 /* Free a single dynamically allocated alignInfo such as created
  * with alignInfoLoad(). */
 
 void alignInfoFreeList(struct alignInfo **pList);
 /* Free a list of dynamically allocated alignInfo's */
 
 void alignInfoOutput(struct alignInfo *el, FILE *f, char sep, char lastSep);
 /* Print out alignInfo.  Separate fields with sep. Follow last field with lastSep. */
 
 #define alignInfoTabOut(el,f) alignInfoOutput(el,f,'\t','\n');
 /* Print out alignInfo as a line in a tab-separated file. */
 
 #define alignInfoCommaOut(el,f) alignInfoOutput(el,f,',',',');
 /* Print out alignInfo as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* ALIGNINFO_H */