e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/alleleFreqs.h src/hg/inc/alleleFreqs.h
index e4dcd92..3f8090f 100644
--- src/hg/inc/alleleFreqs.h
+++ src/hg/inc/alleleFreqs.h
@@ -1,94 +1,97 @@
 /* alleleFreqs.h was originally generated by the autoSql program, which also 
  * generated alleleFreqs.c and alleleFreqs.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef ALLELEFREQS_H
 #define ALLELEFREQS_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define ALLELEFREQS_NUM_COLS 16
 
 struct alleleFreqs
 /* Allele Frequencies from HapMap */
     {
     struct alleleFreqs *next;  /* Next in singly linked list. */
     char *rsId;	/*  rs			rs2104604 */
     char *chrom;	/*  chrom			Chr1 */
     int chromStart;	/*  pos			101809619 */
     char strand;	/*  strand		+ */
     char *assembly;	/*  build			ncbi_b34 */
     char *center;	/*  center		bcm */
     char *protLSID;	/* protLSID */
     char *assayLSID;	/* assayLSID */
     char *panelLSID;	/* panelLSID */
     char majAllele;	/*  major_allele		G */
     int majCount;	/*  major_allele_count	120 */
     float majFreq;	/*  major_allele_freq	1 */
     char minAllele;	/*  minor_allele		T */
     int minCount;	/*  minor_allele_count	0 */
     float minFreq;	/*  minor_allele_freq	0 */
     int total;	/*  total			120 */
     };
 
 void alleleFreqsStaticLoad(char **row, struct alleleFreqs *ret);
 /* Load a row from alleleFreqs table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct alleleFreqs *alleleFreqsLoad(char **row);
 /* Load a alleleFreqs from row fetched with select * from alleleFreqs
  * from database.  Dispose of this with alleleFreqsFree(). */
 
 struct alleleFreqs *alleleFreqsLoadAll(char *fileName);
 /* Load all alleleFreqs from whitespace-separated file.
  * Dispose of this with alleleFreqsFreeList(). */
 
 struct alleleFreqs *alleleFreqsLoadAllByChar(char *fileName, char chopper);
 /* Load all alleleFreqs from chopper separated file.
  * Dispose of this with alleleFreqsFreeList(). */
 
 #define alleleFreqsLoadAllByTab(a) alleleFreqsLoadAllByChar(a, '\t');
 /* Load all alleleFreqs from tab separated file.
  * Dispose of this with alleleFreqsFreeList(). */
 
 struct alleleFreqs *alleleFreqsLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all alleleFreqs from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with alleleFreqsFreeList(). */
 
 void alleleFreqsSaveToDb(struct sqlConnection *conn, struct alleleFreqs *el, char *tableName, int updateSize);
 /* Save alleleFreqs as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct alleleFreqs *alleleFreqsCommaIn(char **pS, struct alleleFreqs *ret);
 /* Create a alleleFreqs out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new alleleFreqs */
 
 void alleleFreqsFree(struct alleleFreqs **pEl);
 /* Free a single dynamically allocated alleleFreqs such as created
  * with alleleFreqsLoad(). */
 
 void alleleFreqsFreeList(struct alleleFreqs **pList);
 /* Free a list of dynamically allocated alleleFreqs's */
 
 void alleleFreqsOutput(struct alleleFreqs *el, FILE *f, char sep, char lastSep);
 /* Print out alleleFreqs.  Separate fields with sep. Follow last field with lastSep. */
 
 #define alleleFreqsTabOut(el,f) alleleFreqsOutput(el,f,'\t','\n');
 /* Print out alleleFreqs as a line in a tab-separated file. */
 
 #define alleleFreqsCommaOut(el,f) alleleFreqsOutput(el,f,',',',');
 /* Print out alleleFreqs as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* ALLELEFREQS_H */