e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/altGraph.h src/hg/inc/altGraph.h
index ed3453a..f560cda 100644
--- src/hg/inc/altGraph.h
+++ src/hg/inc/altGraph.h
@@ -1,80 +1,83 @@
 /* altGraph.h was originally generated by the autoSql program, which also 
  * generated altGraph.c and altGraph.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef ALTGRAPH_H
 #define ALTGRAPH_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 struct altGraph
 /* An alternatively spliced gene graph. */
     {
     struct altGraph *next;  /* Next in singly linked list. */
     unsigned id;	/* Unique ID */
     char *tName;	/* name of target sequence, often a chrom. */
     int tStart;	/* First bac touched by graph */
     int tEnd;	/* Start position in first bac */
     char strand[3];	/* + or - strand */
     unsigned vertexCount;	/* Number of vertices in graph */
     unsigned char *vTypes;	/* Type for each vertex */
     int *vPositions;	/* Position in target for each vertex */
     unsigned edgeCount;	/* Number of edges in graph */
     int *edgeStarts;	/* Array with start vertex of edges */
     int *edgeEnds;	/* Array with end vertex of edges. */
     int mrnaRefCount;	/* Number of supporting mRNAs. */
     char **mrnaRefs;	/* Ids of mrnas supporting this. */
     };
 
 struct altGraph *altGraphLoad(char **row);
 /* Load a altGraph from row fetched with select * from altGraph
  * from database.  Dispose of this with altGraphFree(). */
 
 struct altGraph *altGraphLoadAll(char *fileName);
 /* Load all altGraph from a tab-separated file.
  * Dispose of this with altGraphFreeList(). */
 
 struct altGraph *altGraphLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all altGraph from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with altGraphFreeList(). */
 
 void altGraphSaveToDb(struct sqlConnection *conn, struct altGraph *el, char *tableName, int updateSize);
 /* Save altGraph as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct altGraph *altGraphCommaIn(char **pS, struct altGraph *ret);
 /* Create a altGraph out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new altGraph */
 
 void altGraphFree(struct altGraph **pEl);
 /* Free a single dynamically allocated altGraph such as created
  * with altGraphLoad(). */
 
 void altGraphFreeList(struct altGraph **pList);
 /* Free a list of dynamically allocated altGraph's */
 
 void altGraphOutput(struct altGraph *el, FILE *f, char sep, char lastSep);
 /* Print out altGraph.  Separate fields with sep. Follow last field with lastSep. */
 
 #define altGraphTabOut(el,f) altGraphOutput(el,f,'\t','\n');
 /* Print out altGraph as a line in a tab-separated file. */
 
 #define altGraphCommaOut(el,f) altGraphOutput(el,f,',',',');
 /* Print out altGraph as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 int altGraphNumAltSplices(struct altGraph *ag);
 /* Count number of times that exons have more than one edge through them */
 
 #endif /* ALTGRAPH_H */