e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/ccdsGeneMap.h src/hg/inc/ccdsGeneMap.h
index 1cfd6c9..35b3177 100644
--- src/hg/inc/ccdsGeneMap.h
+++ src/hg/inc/ccdsGeneMap.h
@@ -1,94 +1,97 @@
 /* ccdsGeneMap.h was originally generated by the autoSql program, which also 
  * generated ccdsGeneMap.c and ccdsGeneMap.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2007 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef CCDSGENEMAP_H
 #define CCDSGENEMAP_H
 
 #define CCDSGENEMAP_NUM_COLS 6
 
 struct ccdsGeneMap
 /* mapping between CCDS ids and other gene tables by similarity */
     {
     struct ccdsGeneMap *next;  /* Next in singly linked list. */
     char *ccdsId;	/* CCDS id with version  */
     char *geneId;	/* Id of other gene */
     char *chrom;	/* chromosome of other gene */
     unsigned chromStart;	/* chromosome start of other gene */
     unsigned chromEnd;	/* chromosome end of other gene */
     float cdsSimilarity;	/* CDS similarity by genomic overlap */
     };
 
 void ccdsGeneMapStaticLoad(char **row, struct ccdsGeneMap *ret);
 /* Load a row from ccdsGeneMap table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct ccdsGeneMap *ccdsGeneMapLoad(char **row);
 /* Load a ccdsGeneMap from row fetched with select * from ccdsGeneMap
  * from database.  Dispose of this with ccdsGeneMapFree(). */
 
 struct ccdsGeneMap *ccdsGeneMapLoadAll(char *fileName);
 /* Load all ccdsGeneMap from whitespace-separated file.
  * Dispose of this with ccdsGeneMapFreeList(). */
 
 struct ccdsGeneMap *ccdsGeneMapLoadAllByChar(char *fileName, char chopper);
 /* Load all ccdsGeneMap from chopper separated file.
  * Dispose of this with ccdsGeneMapFreeList(). */
 
 #define ccdsGeneMapLoadAllByTab(a) ccdsGeneMapLoadAllByChar(a, '\t');
 /* Load all ccdsGeneMap from tab separated file.
  * Dispose of this with ccdsGeneMapFreeList(). */
 
 struct ccdsGeneMap *ccdsGeneMapCommaIn(char **pS, struct ccdsGeneMap *ret);
 /* Create a ccdsGeneMap out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ccdsGeneMap */
 
 void ccdsGeneMapFree(struct ccdsGeneMap **pEl);
 /* Free a single dynamically allocated ccdsGeneMap such as created
  * with ccdsGeneMapLoad(). */
 
 void ccdsGeneMapFreeList(struct ccdsGeneMap **pList);
 /* Free a list of dynamically allocated ccdsGeneMap's */
 
 void ccdsGeneMapOutput(struct ccdsGeneMap *el, FILE *f, char sep, char lastSep);
 /* Print out ccdsGeneMap.  Separate fields with sep. Follow last field with lastSep. */
 
 #define ccdsGeneMapTabOut(el,f) ccdsGeneMapOutput(el,f,'\t','\n');
 /* Print out ccdsGeneMap as a line in a tab-separated file. */
 
 #define ccdsGeneMapCommaOut(el,f) ccdsGeneMapOutput(el,f,',',',');
 /* Print out ccdsGeneMap as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 char *ccdsGeneMapGetCreateSql(char *table);
 /* Get SQL command to create ccdsGeneMap table. Result should be freed. */
 
 struct ccdsGeneMap *ccdsGeneMapSelectByCcds(struct sqlConnection *conn, char *mapTable,
                                             char *ccdsId, char *chrom, float minSimilarity);
 /* select ccdsGeneMap records by ccds and minimum CDS similarity from the
  * specified table. */
 
 struct ccdsGeneMap *ccdsGeneMapSelectByGene(struct sqlConnection *conn, char *mapTable,
                                             char *geneId, float minSimilarity);
 /* select ccdsGeneMap records by gene id and minimum CDS similarity from the
  * specified table. */
 
 struct ccdsGeneMap *ccdsGeneMapSelectByGeneOver(struct sqlConnection *conn, char *mapTable,
                                                 char *geneId, char *chrom, unsigned chromStart,
                                                 unsigned chromEnd, float minSimilarity);
 /* select ccdsGeneMap records by gene id, location overlap, and minimum CDS
  * similarity from the specified table. */
 
 int ccdsGeneMapSimilarityCmp(const void *va, const void *vb);
 /* compare based on descending similarity */
 
 int ccdsGeneMapCcdsIdCmp(const void *va, const void *vb);
 /* compare based on gene id */
 
 int ccdsGeneMapGeneIdCmp(const void *va, const void *vb);
 /* compare based on gene id */
 
 #endif /* CCDSGENEMAP_H */