e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/ccdsInfo.h src/hg/inc/ccdsInfo.h
index f0fd8d2..153326a 100644
--- src/hg/inc/ccdsInfo.h
+++ src/hg/inc/ccdsInfo.h
@@ -1,98 +1,101 @@
 /* ccdsInfo.h was originally generated by the autoSql program, which also 
  * generated ccdsInfo.c and ccdsInfo.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2006 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef CCDSINFO_H
 #define CCDSINFO_H
 
 #define CCDSINFO_NUM_COLS 4
 
 enum ccdsInfoSrcDb
 /* source database */
 {
     ccdsInfoNull = 0,  /* used for no src db */
     ccdsInfoNcbi = 1,
     ccdsInfoEnsembl = 2,
     ccdsInfoVega = 3
 };
 
 struct ccdsInfo
 /* Consensus CDS information, links CCDS ids to NCBI and Hinxton accessions */
     {
     struct ccdsInfo *next;  /* Next in singly linked list. */
     char ccds[13];	/* CCDS id */
     enum ccdsInfoSrcDb srcDb;	/* source database: N=NCBI, H=Hinxton */
     char mrnaAcc[19];	/* mRNA accession (NCBI or Hinxton) */
     char protAcc[19];	/* protein accession (NCBI or Hinxton) */
     };
 
 void ccdsInfoStaticLoad(char **row, struct ccdsInfo *ret);
 /* Load a row from ccdsInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct ccdsInfo *ccdsInfoLoad(char **row);
 /* Load a ccdsInfo from row fetched with select * from ccdsInfo
  * from database.  Dispose of this with ccdsInfoFree(). */
 
 struct ccdsInfo *ccdsInfoLoadAll(char *fileName);
 /* Load all ccdsInfo from whitespace-separated file.
  * Dispose of this with ccdsInfoFreeList(). */
 
 struct ccdsInfo *ccdsInfoLoadAllByChar(char *fileName, char chopper);
 /* Load all ccdsInfo from chopper separated file.
  * Dispose of this with ccdsInfoFreeList(). */
 
 #define ccdsInfoLoadAllByTab(a) ccdsInfoLoadAllByChar(a, '\t');
 /* Load all ccdsInfo from tab separated file.
  * Dispose of this with ccdsInfoFreeList(). */
 
 struct ccdsInfo *ccdsInfoCommaIn(char **pS, struct ccdsInfo *ret);
 /* Create a ccdsInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ccdsInfo */
 
 void ccdsInfoFree(struct ccdsInfo **pEl);
 /* Free a single dynamically allocated ccdsInfo such as created
  * with ccdsInfoLoad(). */
 
 void ccdsInfoFreeList(struct ccdsInfo **pList);
 /* Free a list of dynamically allocated ccdsInfo's */
 
 void ccdsInfoOutput(struct ccdsInfo *el, FILE *f, char sep, char lastSep);
 /* Print out ccdsInfo.  Separate fields with sep. Follow last field with lastSep. */
 
 #define ccdsInfoTabOut(el,f) ccdsInfoOutput(el,f,'\t','\n');
 /* Print out ccdsInfo as a line in a tab-separated file. */
 
 #define ccdsInfoCommaOut(el,f) ccdsInfoOutput(el,f,',',',');
 /* Print out ccdsInfo as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 char *ccdsInfoGetCreateSql(char *table);
 /* Get sql command to create ccdsInfo table. Result should be freed. */
 
 void ccdsInfoMRnaSort(struct ccdsInfo **ccdsInfos);
 /* Sort list by mrnaAcc */
 
 void ccdsInfoCcdsMRnaSort(struct ccdsInfo **ccdsInfos);
 /* Sort list by CCDS id and mrnaAcc */
 
 struct ccdsInfo *ccdsInfoSelectByCcds(struct sqlConnection *conn, char *ccdsId,
                                       enum ccdsInfoSrcDb srcDb);
 /* Obtain list of ccdsInfo object for the specified id and srcDb.  If srcDb is
  * ccdsInfoNull, return all srcDbs.  Return NULL if ccdsId it's not valid */
 
 struct ccdsInfo *ccdsInfoSelectByMrna(struct sqlConnection *conn, char *mrnaAcc);
 /* Obtain of ccdsInfo object for the specified mRNA or NULL if mrna is not
  * associated with a CCDS.  Version number is optional for RefSeq mrnaAcc. */
 
 struct ccdsInfo *ccdsInfoByKd(struct sqlConnection *conn, char *kgId,
                               float minOver);
 /* select ccdsInfo records by known genes ids and minimum CDS overlap.
  * This goes throught the refSeqKg table, and will return null if that
  * table doesn't exist.
  */
 
 #endif /* CCDSINFO_H */