e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/cdsEvidence.h src/hg/inc/cdsEvidence.h
index 15c9b3d..d2a281b 100644
--- src/hg/inc/cdsEvidence.h
+++ src/hg/inc/cdsEvidence.h
@@ -1,81 +1,84 @@
 /* cdsEvidence.h was originally generated by the autoSql program, which also 
  * generated cdsEvidence.c and cdsEvidence.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2011 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef CDSEVIDENCE_H
 #define CDSEVIDENCE_H
 
 #ifndef BED_H
 #include "bed.h"
 #endif
 
 #define CDSEVIDENCE_NUM_COLS 11
 
 struct cdsEvidence
 /* Evidence for CDS boundary within a transcript */
     {
     struct cdsEvidence *next;  /* Next in singly linked list. */
     char *name;	/* Name of transcript */
     int start;	/* CDS start within transcript, zero based */
     int end;	/* CDS end, non-inclusive */
     char *source;	/* Source of evidence */
     char *accession;	/* Genbank/uniProt accession */
     double score;	/* 0-1000, higher is better */
     unsigned char startComplete;	/* Starts with ATG? */
     unsigned char endComplete;	/* Ends with stop codon? */
     int cdsCount;	/* Number of CDS blocks */
     int *cdsStarts;	/* Start positions of CDS blocks */
     int *cdsSizes;	/* Sizes of CDS blocks */
     };
 
 struct cdsEvidence *cdsEvidenceLoad(char **row);
 /* Load a cdsEvidence from row fetched with select * from cdsEvidence
  * from database.  Dispose of this with cdsEvidenceFree(). */
 
 struct cdsEvidence *cdsEvidenceLoadAll(char *fileName);
 /* Load all cdsEvidence from whitespace-separated file.
  * Dispose of this with cdsEvidenceFreeList(). */
 
 struct cdsEvidence *cdsEvidenceLoadAllByChar(char *fileName, char chopper);
 /* Load all cdsEvidence from chopper separated file.
  * Dispose of this with cdsEvidenceFreeList(). */
 
 #define cdsEvidenceLoadAllByTab(a) cdsEvidenceLoadAllByChar(a, '\t');
 /* Load all cdsEvidence from tab separated file.
  * Dispose of this with cdsEvidenceFreeList(). */
 
 struct cdsEvidence *cdsEvidenceCommaIn(char **pS, struct cdsEvidence *ret);
 /* Create a cdsEvidence out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cdsEvidence */
 
 void cdsEvidenceFree(struct cdsEvidence **pEl);
 /* Free a single dynamically allocated cdsEvidence such as created
  * with cdsEvidenceLoad(). */
 
 void cdsEvidenceFreeList(struct cdsEvidence **pList);
 /* Free a list of dynamically allocated cdsEvidence's */
 
 void cdsEvidenceOutput(struct cdsEvidence *el, FILE *f, char sep, char lastSep);
 /* Print out cdsEvidence.  Separate fields with sep. Follow last field with lastSep. */
 
 #define cdsEvidenceTabOut(el,f) cdsEvidenceOutput(el,f,'\t','\n');
 /* Print out cdsEvidence as a line in a tab-separated file. */
 
 #define cdsEvidenceCommaOut(el,f) cdsEvidenceOutput(el,f,',',',');
 /* Print out cdsEvidence as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct hash *cdsEvidenceReadAllIntoHash(char *fileName);
 /* Return hash full of cdsEvidence keyed by transcript name. */
 
 void cdsEvidenceSetBedThick(struct cdsEvidence *cds, struct bed *bed, 
 			    const boolean freeOfCdsErrors);
 /* Set thickStart/thickEnd on bed from cdsEvidence. */
 
 int cdsEvidenceCmpScore(const void *va, const void *vb);
 /* Compare to sort based on score (descending). */
 
 #endif /* CDSEVIDENCE_H */