e70152e44cc66cc599ff6b699eb8adc07f3e656a kent Sat May 24 21:09:34 2014 -0700 Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment. diff --git src/hg/inc/cnpSebat.h src/hg/inc/cnpSebat.h index 72cd2a1..80225a0 100644 --- src/hg/inc/cnpSebat.h +++ src/hg/inc/cnpSebat.h @@ -1,84 +1,87 @@ /* cnpSebat.h was originally generated by the autoSql program, which also * generated cnpSebat.c and cnpSebat.sql. This header links the database and * the RAM representation of objects. */ +/* Copyright (C) 2013 The Regents of the University of California + * See README in this or parent directory for licensing information. */ + #ifndef CNPSEBAT_H #define CNPSEBAT_H #ifndef JKSQL_H #include "jksql.h" #endif #define CNPSEBAT_NUM_COLS 6 struct cnpSebat /* CNP Data from the Sebat lab */ { struct cnpSebat *next; /* Next in singly linked list. */ char *chrom; /* Chromosome */ unsigned chromStart; /* Start position in chrom */ unsigned chromEnd; /* End position in chrom */ char *name; /* Gain or Loss */ unsigned probes; /* Number of probes */ unsigned individuals; /* Number of individuals */ }; void cnpSebatStaticLoad(char **row, struct cnpSebat *ret); /* Load a row from cnpSebat table into ret. The contents of ret will * be replaced at the next call to this function. */ struct cnpSebat *cnpSebatLoad(char **row); /* Load a cnpSebat from row fetched with select * from cnpSebat * from database. Dispose of this with cnpSebatFree(). */ struct cnpSebat *cnpSebatLoadAll(char *fileName); /* Load all cnpSebat from whitespace-separated file. * Dispose of this with cnpSebatFreeList(). */ struct cnpSebat *cnpSebatLoadAllByChar(char *fileName, char chopper); /* Load all cnpSebat from chopper separated file. * Dispose of this with cnpSebatFreeList(). */ #define cnpSebatLoadAllByTab(a) cnpSebatLoadAllByChar(a, '\t'); /* Load all cnpSebat from tab separated file. * Dispose of this with cnpSebatFreeList(). */ struct cnpSebat *cnpSebatLoadByQuery(struct sqlConnection *conn, char *query); /* Load all cnpSebat from table that satisfy the query given. * Where query is of the form 'select * from example where something=something' * or 'select example.* from example, anotherTable where example.something = * anotherTable.something'. * Dispose of this with cnpSebatFreeList(). */ void cnpSebatSaveToDb(struct sqlConnection *conn, struct cnpSebat *el, char *tableName, int updateSize); /* Save cnpSebat as a row to the table specified by tableName. * As blob fields may be arbitrary size updateSize specifies the approx size * of a string that would contain the entire query. Arrays of native types are * converted to comma separated strings and loaded as such, User defined types are * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */ struct cnpSebat *cnpSebatCommaIn(char **pS, struct cnpSebat *ret); /* Create a cnpSebat out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new cnpSebat */ void cnpSebatFree(struct cnpSebat **pEl); /* Free a single dynamically allocated cnpSebat such as created * with cnpSebatLoad(). */ void cnpSebatFreeList(struct cnpSebat **pList); /* Free a list of dynamically allocated cnpSebat's */ void cnpSebatOutput(struct cnpSebat *el, FILE *f, char sep, char lastSep); /* Print out cnpSebat. Separate fields with sep. Follow last field with lastSep. */ #define cnpSebatTabOut(el,f) cnpSebatOutput(el,f,'\t','\n'); /* Print out cnpSebat as a line in a tab-separated file. */ #define cnpSebatCommaOut(el,f) cnpSebatOutput(el,f,',',','); /* Print out cnpSebat as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ #endif /* CNPSEBAT_H */