e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/dbRIP.h src/hg/inc/dbRIP.h
index 9c52365..f2f395b 100644
--- src/hg/inc/dbRIP.h
+++ src/hg/inc/dbRIP.h
@@ -1,118 +1,121 @@
 /* dbRIP.h was originally generated by the autoSql program, which also 
  * generated dbRIP.c and dbRIP.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef DBRIP_H
 #define DBRIP_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define DBRIP_NUM_COLS 22
 
 struct dbRIP
 /* Retrotransposon Insertion Polymorphisms in Humans */
     {
     struct dbRIP *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome (or contig, scaffold, etc.) */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Database ID */
     unsigned score;	/* Score from 0-1000 */
     char strand[2];	/* + or - */
     char *originalId;	/* original ID */
     char *forwardPrimer;	/* forward Primer */
     char *reversePrimer;	/* reverse Primer */
     char *polyClass;	/* Repeat Class */
     char *polyFamily;	/* Repeat Family */
     char *polySubfamily;	/* Repeat Sub-family */
     char *polySeq;	/* sequence */
     char *polySource;	/* source */
     char *reference;	/* reference */
     char *ascertainingMethod;	/* Ascertaining Method */
     char *remarks;	/* remarks */
     float tm;	/* temperature */
     int filledSize;	/* filled size */
     int emptySize;	/* empty size */
     char *disease;	/* disease */
     char *genoRegion;	/* genome region */
     };
 
 void dbRIPStaticLoad(char **row, struct dbRIP *ret);
 /* Load a row from dbRIP table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct dbRIP *dbRIPLoad(char **row);
 /* Load a dbRIP from row fetched with select * from dbRIP
  * from database.  Dispose of this with dbRIPFree(). */
 
 struct dbRIP *dbRIPLoadAll(char *fileName);
 /* Load all dbRIP from whitespace-separated file.
  * Dispose of this with dbRIPFreeList(). */
 
 struct dbRIP *dbRIPLoadAllByChar(char *fileName, char chopper);
 /* Load all dbRIP from chopper separated file.
  * Dispose of this with dbRIPFreeList(). */
 
 #define dbRIPLoadAllByTab(a) dbRIPLoadAllByChar(a, '\t');
 /* Load all dbRIP from tab separated file.
  * Dispose of this with dbRIPFreeList(). */
 
 struct dbRIP *dbRIPLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all dbRIP from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with dbRIPFreeList(). */
 
 void dbRIPSaveToDb(struct sqlConnection *conn, struct dbRIP *el, char *tableName, int updateSize);
 /* Save dbRIP as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct dbRIP *dbRIPCommaIn(char **pS, struct dbRIP *ret);
 /* Create a dbRIP out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new dbRIP */
 
 void dbRIPFree(struct dbRIP **pEl);
 /* Free a single dynamically allocated dbRIP such as created
  * with dbRIPLoad(). */
 
 void dbRIPFreeList(struct dbRIP **pList);
 /* Free a list of dynamically allocated dbRIP's */
 
 void dbRIPOutput(struct dbRIP *el, FILE *f, char sep, char lastSep);
 /* Print out dbRIP.  Separate fields with sep. Follow last field with lastSep. */
 
 #define dbRIPTabOut(el,f) dbRIPOutput(el,f,'\t','\n');
 /* Print out dbRIP as a line in a tab-separated file. */
 
 #define dbRIPCommaOut(el,f) dbRIPOutput(el,f,',',',');
 /* Print out dbRIP as a comma separated list including final comma. */
 
 /* ---------------- End autoSql Generated Code ---------------------- */
 
 /* items for trackUi options and filters	*/
 #define GENO_REGION	"dbRIP.genoRegion"
 #define POLY_SOURCE	"dbRIP.polySource"
 #define POLY_SUBFAMILY	"dbRIP.polySubFamily"
 #define ETHNIC_GROUP	"dbRIP.ethnicGroup"
 #define ETHNIC_GROUP_EXCINC	"dbRIP.ethnicExcInc"
 #define dbRIP_DISEASE	"dbRIP.disease"
 
 #define GENO_REGION_DEFAULT	"any"
 #define POLY_SOURCE_DEFAULT	"don't care"
 #define POLY_SUBFAMILY_DEFAULT	"any"
 #define ETHNIC_GROUP_DEFAULT	"any"
 #define ETHNIC_NOT_DEFAULT	"include"
 #define DISEASE_DEFAULT	"don't care"
 
 #define ALLELE_FREQ_HI	"alleleFreqHi"
 #define ALLELE_FREQ_LOW	"alleleFreqLow"
 
 #endif /* DBRIP_H */