e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/dgvPlus.h src/hg/inc/dgvPlus.h
index 055ad03..1e818da 100644
--- src/hg/inc/dgvPlus.h
+++ src/hg/inc/dgvPlus.h
@@ -1,84 +1,87 @@
 /* dgvPlus.h was originally generated by the autoSql program, which also 
  * generated dgvPlus.c and dgvPlus.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef DGVPLUS_H
 #define DGVPLUS_H
 
 #define DGVPLUS_NUM_COLS 22
 
 extern char *dgvPlusCommaSepFieldNames;
 
 struct dgvPlus
 /* Database of Genomic Variants incorporating dbVar, July 2013 and later */
     {
     struct dgvPlus *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* ID of merged variant or supporting variant */
     unsigned score;	/* Score from 0-1000 (placeholder for BED 9+ format) */
     char strand[2];	/* + or - (placeholder for BED 9+ format) */
     unsigned thickStart;	/* Same as chromStart (placeholder for BED 9+ format) */
     unsigned thickEnd;	/* Same as chromEnd (placeholder for BED 9+ format) */
     unsigned itemRgb;	/* Item R,G,B color. */
     char *varType;	/* Type of variation */
     char *reference;	/* Literature reference for the study that included this variant */
     unsigned pubMedId;	/* For linking to pubMed abstract of reference */
     char *method;	/* Brief description of method */
     char *platform;	/* Sequencing platform (if specified) */
     char *mergedVariants;	/* If this is a supporting variant, ID of merged variant */
     char *supportingVariants;	/* If this is a merged variant, IDs of supporting variants */
     unsigned sampleSize;	/* Number of samples in study */
     unsigned observedGains;	/* Number of samples with copy number gains */
     unsigned observedLosses;	/* Number of samples with copy number losses */
     char *cohortDescription;	/* Description of sample population for the study */
     char *genes;	/* Genes overlapping this variant */
     char *samples;	/* Sample IDs if available */
     };
 
 void dgvPlusStaticLoad(char **row, struct dgvPlus *ret);
 /* Load a row from dgvPlus table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct dgvPlus *dgvPlusLoad(char **row);
 /* Load a dgvPlus from row fetched with select * from dgvPlus
  * from database.  Dispose of this with dgvPlusFree(). */
 
 struct dgvPlus *dgvPlusLoadAll(char *fileName);
 /* Load all dgvPlus from whitespace-separated file.
  * Dispose of this with dgvPlusFreeList(). */
 
 struct dgvPlus *dgvPlusLoadAllByChar(char *fileName, char chopper);
 /* Load all dgvPlus from chopper separated file.
  * Dispose of this with dgvPlusFreeList(). */
 
 #define dgvPlusLoadAllByTab(a) dgvPlusLoadAllByChar(a, '\t');
 /* Load all dgvPlus from tab separated file.
  * Dispose of this with dgvPlusFreeList(). */
 
 struct dgvPlus *dgvPlusCommaIn(char **pS, struct dgvPlus *ret);
 /* Create a dgvPlus out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new dgvPlus */
 
 void dgvPlusFree(struct dgvPlus **pEl);
 /* Free a single dynamically allocated dgvPlus such as created
  * with dgvPlusLoad(). */
 
 void dgvPlusFreeList(struct dgvPlus **pList);
 /* Free a list of dynamically allocated dgvPlus's */
 
 void dgvPlusOutput(struct dgvPlus *el, FILE *f, char sep, char lastSep);
 /* Print out dgvPlus.  Separate fields with sep. Follow last field with lastSep. */
 
 #define dgvPlusTabOut(el,f) dgvPlusOutput(el,f,'\t','\n');
 /* Print out dgvPlus as a line in a tab-separated file. */
 
 #define dgvPlusCommaOut(el,f) dgvPlusOutput(el,f,',',',');
 /* Print out dgvPlus as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* DGVPLUS_H */