e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/gencodeIntron.h src/hg/inc/gencodeIntron.h
index d7ba2d5..e0c155d 100644
--- src/hg/inc/gencodeIntron.h
+++ src/hg/inc/gencodeIntron.h
@@ -1,89 +1,92 @@
 /* gencodeIntron.h was originally generated by the autoSql program, which also 
  * generated gencodeIntron.c and gencodeIntron.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef GENCODEINTRON_H
 #define GENCODEINTRON_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define GENCODEINTRON_NUM_COLS 8
 
 struct gencodeIntron
 /* Gencode intron status */
     {
     struct gencodeIntron *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome or FPC contig */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Intron_id from GTF */
     char *status;	/* enum('not_tested', 'RT_positive','RT_negative','RT_wrong_junction', 'RT_submitted') */
     char strand[2];	/* + or - */
     char *transcript;	/* Transcript_id from GTF */
     char *geneId;	/* Gene_id from GTF */
     };
 
 void gencodeIntronStaticLoad(char **row, struct gencodeIntron *ret);
 /* Load a row from gencodeIntron table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct gencodeIntron *gencodeIntronLoad(char **row);
 /* Load a gencodeIntron from row fetched with select * from gencodeIntron
  * from database.  Dispose of this with gencodeIntronFree(). */
 
 struct gencodeIntron *gencodeIntronLoadAll(char *fileName);
 /* Load all gencodeIntron from whitespace-separated file.
  * Dispose of this with gencodeIntronFreeList(). */
 
 struct gencodeIntron *gencodeIntronLoadAllByChar(char *fileName, char chopper);
 /* Load all gencodeIntron from chopper separated file.
  * Dispose of this with gencodeIntronFreeList(). */
 
 #define gencodeIntronLoadAllByTab(a) gencodeIntronLoadAllByChar(a, '\t');
 /* Load all gencodeIntron from tab separated file.
  * Dispose of this with gencodeIntronFreeList(). */
 
 struct gencodeIntron *gencodeIntronLoadByQuery(struct sqlConnection *conn, char *query, int rowOffset);
 /* Load all gencodeIntron from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with gencodeIntronFreeList(). */
 
 void gencodeIntronSaveToDb(struct sqlConnection *conn, struct gencodeIntron *el, char *tableName, int updateSize);
 /* Save gencodeIntron as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct gencodeIntron *gencodeIntronCommaIn(char **pS, struct gencodeIntron *ret);
 /* Create a gencodeIntron out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gencodeIntron */
 
 void gencodeIntronFree(struct gencodeIntron **pEl);
 /* Free a single dynamically allocated gencodeIntron such as created
  * with gencodeIntronLoad(). */
 
 void gencodeIntronFreeList(struct gencodeIntron **pList);
 /* Free a list of dynamically allocated gencodeIntron's */
 
 void gencodeIntronOutput(struct gencodeIntron *el, FILE *f, char sep, char lastSep);
 /* Print out gencodeIntron.  Separate fields with sep. Follow last field with lastSep. */
 
 #define gencodeIntronTabOut(el,f) gencodeIntronOutput(el,f,'\t','\n');
 /* Print out gencodeIntron as a line in a tab-separated file. */
 
 #define gencodeIntronCommaOut(el,f) gencodeIntronOutput(el,f,',',',');
 /* Print out gencodeIntron as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 void gencodeIntronTableCreate(struct sqlConnection *conn, char *tableName, int indexSize);
 /* Create a gencodeIntron table with the given name */
 
 #endif /* GENCODEINTRON_H */