e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/genePix.h src/hg/inc/genePix.h
index 177c6b3..bed708a 100644
--- src/hg/inc/genePix.h
+++ src/hg/inc/genePix.h
@@ -1,121 +1,124 @@
 /* genePix.h - Interface to genePix database. */
 
+/* Copyright (C) 2005 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef GENEPIX_H
 #define GENEPIX_H
 
 char *genePixFullSizePath(struct sqlConnection *conn, int id);
 /* Fill in path for full image genePix of given id.  FreeMem
  * this when done */
 
 char *genePixScreenSizePath(struct sqlConnection *conn, int id);
 /* Fill in path for screen-sized (~700x700) image genePix of given id. 
  * FreeMem when done. */
 
 char *genePixThumbSizePath(struct sqlConnection *conn, int id);
 /* Fill in path for thumbnail image (~200x200) genePix of given id. 
  * FreeMem when done. */
 
 char *genePixOrganism(struct sqlConnection *conn, int id);
 /* Return binomial scientific name of organism associated with given image. 
  * FreeMem this when done. */
 
 char *genePixStage(struct sqlConnection *conn, int id, boolean doLong);
 /* Return string describing growth stage of organism.  The description
  * will be 5 or 6 characters wide if doLong is false, and about
  * 20 characters wide if it is true. FreeMem this when done. */
 
 struct slName *genePixGeneName(struct sqlConnection *conn, int id);
 /* Return list of gene names  - HUGO if possible, RefSeq/GenBank, etc if not. 
  * FreeMem this when done. */
 
 struct slName *genePixRefSeq(struct sqlConnection *conn, int id);
 /* Return list of RefSeq accessions or n/a if none available. 
  * FreeMem this when done. */
 
 struct slName *genePixGenbank(struct sqlConnection *conn, int id);
 /* Return list of Genbank accessions or n/a if none available. 
  * FreeMem this when done. */
 
 struct slName *genePixUniProt(struct sqlConnection *conn, int id);
 /* Return list of UniProt accessions or n/a if none available. 
  * FreeMem this when done. */
 
 char *genePixSubmitId(struct sqlConnection *conn, int id);
 /* Return submitId  for image.  (Internal id for data set)
  * FreeMem this when done. */
 
 char *genePixBodyPart(struct sqlConnection *conn, int id);
 /* Return body part if any.  FreeMem this when done. */
 
 char *genePixSliceType(struct sqlConnection *conn, int id);
 /* Return slice type if any.  FreeMem this when done. */
 
 char *genePixTreatment(struct sqlConnection *conn, int id);
 /* Return treatment if any.  FreeMem this when done.*/
 
 char *genePixContributors(struct sqlConnection *conn, int id);
 /* Return comma-separated list of contributors in format Kent W.H, Wu F.Y. 
  * FreeMem this when done. */
 
 char *genePixPublication(struct sqlConnection *conn, int id);
 /* Return name of publication associated with image if any.  
  * FreeMem this when done. */
 
 char *genePixPubUrl(struct sqlConnection *conn, int id);
 /* Return url of publication associated with image if any.
  * FreeMem this when done. */
 
 char *genePixSetUrl(struct sqlConnection *conn, int id);
 /* Return contributor url associated with image set if any. 
  * FreeMem this when done. */
 
 char *genePixItemUrl(struct sqlConnection *conn, int id);
 /* Return contributor url associated with this image. 
  * Substitute in submitId for %s before using.  May be null.
  * FreeMem when done. */
 
 enum genePixSearchType 
     {
     gpsNone = 0,
     gpsExact = 1,
     gpsPrefix = 2,
     gpsLike = 3,
     };
    
 struct slInt *genePixSelectNamed(struct sqlConnection *conn,
 	char *name, enum genePixSearchType how);
 /* Return ids of images that have probes involving gene that match name. */
 
 struct slInt *genePixSelectRefSeq(struct sqlConnection *conn, char *acc);
 /* Return ids of images that have probes involving refSeq mRNA seq. */
 
 struct slInt *genePixSelectLocusLink(struct sqlConnection *conn, char *id);
 /* Return ids of images that have probes involving locusLink (entrez gene)
  * id. */
 
 struct slInt *genePixSelectGenbank(struct sqlConnection *conn, char *acc);
 /* Return ids of images that have probes involving genbank accessioned 
  * sequence */
 
 struct slInt *genePixSelectUniProt(struct sqlConnection *conn, char *acc);
 /* Return ids of images that have probes involving UniProt accessioned
  * sequence. */
 
 #define genePixMaxAge 1.0e12
 
 struct slInt *genePixSelectMulti(
         /* Note most parameters accept NULL or 0 to mean ignore parameter. */
 	struct sqlConnection *conn, 
 	struct slInt *init,	/* Restrict results to those with id in list. */
 	int taxon,		/* Taxon of species to restrict it to. */
 	struct slName *contributors,  /* List of contributers to restrict it to. */
 	enum genePixSearchType how,   /* How to match contributors */
 	boolean startIsEmbryo, double startAge,
 	boolean endIsEmbryo, double endAge);
 /* Return selected genes according to a number of criteria. */
 
 struct slInt *genePixOnSameGene(struct sqlConnection *conn, int id);
 /* Get bio images that are on same gene.  Do slFreeList when done. */
 
 
 #endif /* GENEPIX_H */