e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/hapmapAllelesSummary.h src/hg/inc/hapmapAllelesSummary.h
index 8d07835..4f301cd 100644
--- src/hg/inc/hapmapAllelesSummary.h
+++ src/hg/inc/hapmapAllelesSummary.h
@@ -1,87 +1,90 @@
 /* hapmapAllelesSummary.h was originally generated by the autoSql program, which also 
  * generated hapmapAllelesSummary.c and hapmapAllelesSummary.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2007 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef HAPMAPALLELESSUMMARY_H
 #define HAPMAPALLELESSUMMARY_H
 
 #define HAPMAPALLELESSUMMARY_NUM_COLS 27
 
 struct hapmapAllelesSummary
 /* HapMap allele summaries for filtering */
     {
     struct hapmapAllelesSummary *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom (0 based) */
     unsigned chromEnd;	/* End position in chrom (1 based) */
     char *name;	/* Reference SNP identifier from dbSnp */
     unsigned score;	/* Use for heterozygosity */
     char strand[2];	/* Which genomic strand contains the observed alleles */
     char *observed;	/* Observed string from genotype file */
     char allele1[2];	/* This allele has been observed */
     char *allele2;	/* This allele may not have been observed */
     unsigned popCount;	/* How many populations have data */
     char *isMixed;	/* Are there different major alleles? */
     char *majorAlleleCEU;	/* major allele for the CEU population */
     unsigned majorAlleleCountCEU;	/* major allele count for the CEU population */
     unsigned totalAlleleCountCEU;	/* total allele count for the CEU population */
     char *majorAlleleCHB;	/* major allele for the CHB population */
     unsigned majorAlleleCountCHB;	/* major allele count for the CHB population */
     unsigned totalAlleleCountCHB;	/* total allele count for the CHB population */
     char *majorAlleleJPT;	/* major allele for the JPT population */
     unsigned majorAlleleCountJPT;	/* major allele count for the JPT population */
     unsigned totalAlleleCountJPT;	/* total allele count for the JPT population */
     char *majorAlleleYRI;	/* major allele for the YRI population */
     unsigned majorAlleleCountYRI;	/* major allele count for the YRI population */
     unsigned totalAlleleCountYRI;	/* total allele count for the YRI population */
     char *chimpAllele;	/* chimp allele */
     unsigned chimpAlleleQuality;	/* quality score (0-100) */
     char *macaqueAllele;	/* macaque allele */
     unsigned macaqueAlleleQuality;	/* quality score (0-100) */
     };
 
 void hapmapAllelesSummaryStaticLoad(char **row, struct hapmapAllelesSummary *ret);
 /* Load a row from hapmapAllelesSummary table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct hapmapAllelesSummary *hapmapAllelesSummaryLoad(char **row);
 /* Load a hapmapAllelesSummary from row fetched with select * from hapmapAllelesSummary
  * from database.  Dispose of this with hapmapAllelesSummaryFree(). */
 
 struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAll(char *fileName);
 /* Load all hapmapAllelesSummary from whitespace-separated file.
  * Dispose of this with hapmapAllelesSummaryFreeList(). */
 
 struct hapmapAllelesSummary *hapmapAllelesSummaryLoadAllByChar(char *fileName, char chopper);
 /* Load all hapmapAllelesSummary from chopper separated file.
  * Dispose of this with hapmapAllelesSummaryFreeList(). */
 
 #define hapmapAllelesSummaryLoadAllByTab(a) hapmapAllelesSummaryLoadAllByChar(a, '\t');
 /* Load all hapmapAllelesSummary from tab separated file.
  * Dispose of this with hapmapAllelesSummaryFreeList(). */
 
 struct hapmapAllelesSummary *hapmapAllelesSummaryCommaIn(char **pS, struct hapmapAllelesSummary *ret);
 /* Create a hapmapAllelesSummary out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapAllelesSummary */
 
 void hapmapAllelesSummaryFree(struct hapmapAllelesSummary **pEl);
 /* Free a single dynamically allocated hapmapAllelesSummary such as created
  * with hapmapAllelesSummaryLoad(). */
 
 void hapmapAllelesSummaryFreeList(struct hapmapAllelesSummary **pList);
 /* Free a list of dynamically allocated hapmapAllelesSummary's */
 
 void hapmapAllelesSummaryOutput(struct hapmapAllelesSummary *el, FILE *f, char sep, char lastSep);
 /* Print out hapmapAllelesSummary.  Separate fields with sep. Follow last field with lastSep. */
 
 #define hapmapAllelesSummaryTabOut(el,f) hapmapAllelesSummaryOutput(el,f,'\t','\n');
 /* Print out hapmapAllelesSummary as a line in a tab-separated file. */
 
 #define hapmapAllelesSummaryCommaOut(el,f) hapmapAllelesSummaryOutput(el,f,',',',');
 /* Print out hapmapAllelesSummary as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* HAPMAPALLELESSUMMARY_H */