e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/inc/hapmapPrimateAlleles.h src/hg/inc/hapmapPrimateAlleles.h
index 37c7f75..ec4d58c 100644
--- src/hg/inc/hapmapPrimateAlleles.h
+++ src/hg/inc/hapmapPrimateAlleles.h
@@ -1,96 +1,99 @@
 /* hapmapPrimateAlleles.h was originally generated by the autoSql program, which also 
  * generated hapmapPrimateAlleles.c and hapmapPrimateAlleles.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2013 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef HAPMAPPRIMATEALLELES_H
 #define HAPMAPPRIMATEALLELES_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define HAPMAPPRIMATEALLELES_NUM_COLS 18
 
 struct hapmapPrimateAlleles
 /* Primate (chimp and macaque) alleles for HapMap SNPs */
     {
     struct hapmapPrimateAlleles *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom */
     unsigned chromEnd;	/* End position in chrom */
     char *name;	/* Name of SNP - rsId or temporary name */
     unsigned score;	/* 0 */
     char strand;	/* + or - */
     char refAllele;	/* A, C, G, or T */
     char otherAllele;	/* A, C, G, or T */
     char *chimpChrom;	/* Chimp Chromosome */
     unsigned chimpPos;	/* End position in himpChrom */
     char chimpStrand;	/* + or - or . */
     char *chimpAllele;	/* A, C, G, T, a, c, g, t, or . */
     unsigned chimpQual;	/* Chimp quality score */
     char *rhesusChrom;	/* Rhesus Chromosome */
     unsigned rhesusPos;	/* End position in rhesusChrom */
     char rhesusStrand;	/* + or - or . */
     char *rhesusAllele;	/* A, C, G, T, a, c, g, t, or . */
     unsigned rhesusQual;	/* Rhesus quality score */
     };
 
 void hapmapPrimateAllelesStaticLoad(char **row, struct hapmapPrimateAlleles *ret);
 /* Load a row from hapmapPrimateAlleles table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct hapmapPrimateAlleles *hapmapPrimateAllelesLoad(char **row);
 /* Load a hapmapPrimateAlleles from row fetched with select * from hapmapPrimateAlleles
  * from database.  Dispose of this with hapmapPrimateAllelesFree(). */
 
 struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadAll(char *fileName);
 /* Load all hapmapPrimateAlleles from whitespace-separated file.
  * Dispose of this with hapmapPrimateAllelesFreeList(). */
 
 struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadAllByChar(char *fileName, char chopper);
 /* Load all hapmapPrimateAlleles from chopper separated file.
  * Dispose of this with hapmapPrimateAllelesFreeList(). */
 
 #define hapmapPrimateAllelesLoadAllByTab(a) hapmapPrimateAllelesLoadAllByChar(a, '\t');
 /* Load all hapmapPrimateAlleles from tab separated file.
  * Dispose of this with hapmapPrimateAllelesFreeList(). */
 
 struct hapmapPrimateAlleles *hapmapPrimateAllelesLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all hapmapPrimateAlleles from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with hapmapPrimateAllelesFreeList(). */
 
 void hapmapPrimateAllelesSaveToDb(struct sqlConnection *conn, struct hapmapPrimateAlleles *el, char *tableName, int updateSize);
 /* Save hapmapPrimateAlleles as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct hapmapPrimateAlleles *hapmapPrimateAllelesCommaIn(char **pS, struct hapmapPrimateAlleles *ret);
 /* Create a hapmapPrimateAlleles out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapPrimateAlleles */
 
 void hapmapPrimateAllelesFree(struct hapmapPrimateAlleles **pEl);
 /* Free a single dynamically allocated hapmapPrimateAlleles such as created
  * with hapmapPrimateAllelesLoad(). */
 
 void hapmapPrimateAllelesFreeList(struct hapmapPrimateAlleles **pList);
 /* Free a list of dynamically allocated hapmapPrimateAlleles's */
 
 void hapmapPrimateAllelesOutput(struct hapmapPrimateAlleles *el, FILE *f, char sep, char lastSep);
 /* Print out hapmapPrimateAlleles.  Separate fields with sep. Follow last field with lastSep. */
 
 #define hapmapPrimateAllelesTabOut(el,f) hapmapPrimateAllelesOutput(el,f,'\t','\n');
 /* Print out hapmapPrimateAlleles as a line in a tab-separated file. */
 
 #define hapmapPrimateAllelesCommaOut(el,f) hapmapPrimateAllelesOutput(el,f,',',',');
 /* Print out hapmapPrimateAlleles as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* HAPMAPPRIMATEALLELES_H */